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Report for CCDS23185.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23185.1 Public Mus musculus 9 Rab39 23 108 98 CCDS HistoryNCBI Gene:270160Re-query CCDS DB by CCDS ID:23185.1Re-query CCDS DB by GeneID:270160See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23185.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068449.3 ENSMUSP00000063804.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068449.3Link to Ensembl Protein Viewer:ENSMUSP00000063804.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068449Re-query CCDS DB by Protein ID:ENSMUSP00000063804
Original member Current member NCBI NM_175562.3 NP_780771.1 Accepted alive Link to Nucleotide Sequence:NM_175562.3Link to Protein Sequence:NP_780771.1Re-query CCDS DB by Nucleotide ID:NM_175562Re-query CCDS DB by Protein ID:NP_780771Link to BLAST:NP_780771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780771.1 217 Q8BHD0 217 100% 0 0

Chromosomal Locations for CCDS 23185.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 53686310 53686736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 53705889 53706115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGAGACTATTTGGATCTATCAGTTCCGCCTTATTGTGATCGGAGACTCCACGGTGGGCAAGTCGTGCC
TTCTGCACCGCTTCACCCAGGGCCGCTTCCCAGGGCTGCACTCCCCCGCCTGCGACCCCACAGTCGGCGT
GGACTTCTTCTCGCGCCTGCTGGAGATTGAGCCGGGCAAGAGGATCAAGCTGCAGCTCTGGGACACGGCG
GGGCAGGAGCGCTTCAGATCAATAACTCGATCCTATTACCGCAACTCAGTTGGAGGATTTTTAGTGTTTG
ACATTACTAACCGACGGTCTTTTGAACATGTGAAAGATTGGCTAGAAGAAGCAAAAATGCATGTACAGCC
TTTTCAGATTGTATTTCTACTGGTGGGACATAAATGTGACCTGGCTTCGCAACGCCAGGTTTCAAGGGAA
GAAGCTGAAAGACTGTCAACAGACTGTGGAATGAAGTACATAGAGACCTCAGCCAAGGACGCGACAAACG
TTGAAGAGTCCTTTACAATCCTGACAAGAGACATATATGAGCTTATCAAAAAAGGAGAGATTTGTATTCA
GGATGGATGGGAAGGGGTTAAAAGTGGTTTCGTTCCAAATACTGTGCATTCTTCTGAGGAAGCAGTCAAG
CCCAGAAAAGAGTGCTTCTGTTGA

Translation (217 aa):
METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTA
GQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQRQVSRE
EAERLSTDCGMKYIETSAKDATNVEESFTILTRDIYELIKKGEICIQDGWEGVKSGFVPNTVHSSEEAVK
PRKECFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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