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Report for CCDS19126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19126.1 Public Mus musculus 5 Smarcd3 23 108 98 CCDS HistoryNCBI Gene:66993Re-query CCDS DB by CCDS ID:19126.1Re-query CCDS DB by GeneID:66993See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030791.11 ENSMUSP00000030791.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030791.11Link to Ensembl Protein Viewer:ENSMUSP00000030791.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030791Re-query CCDS DB by Protein ID:ENSMUSP00000030791
Original member Current member NCBI NM_025891.3 NP_080167.3 Accepted alive Link to Nucleotide Sequence:NM_025891.3Link to Protein Sequence:NP_080167.3Re-query CCDS DB by Nucleotide ID:NM_025891Re-query CCDS DB by Protein ID:NP_080167Link to BLAST:NP_080167.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080167.3 483 Q6P9Z1 483 100% 0 0

Chromosomal Locations for CCDS 19126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24592751 24592804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24593017 24593118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24593225 24593347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24593637 24593772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24593922 24594019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24594832 24594993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24595143 24595244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24595390 24595485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24595723 24595845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24595952 24596074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24596807 24596849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24598592 24598803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24601781 24601858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGCCGCGGACGAAGTTGCCGGAGGGGCGCGCAAAGCCACGAAAAGCAAACTTTTTGAGTTTCTGGTCC
ATGGGGTGCGCCCCGGGATGCCGTCTGGAGCCCGAATGCCCCACCAGGGGGCGCCCATGGGCCCCCCGGG
CTCCCCGTACATGGGCAGCCCCGCGGTACGACCCGGCCTGGCCCCCGCGGGCATGGAGCCCGCCCGCAAG
CGAGCAGCGCCCCCGCCCGGGCAGAGCCAGGCACAGGGCCAGGGCCAGCCCGTGCCCACCGCCCCAGCGC
GGAGCCGCAGTGCCAAGAGGAGGAAGATGGCTGACAAAATCCTCCCTCAAAGGATTCGGGAGCTGGTACC
CGAGTCCCAGGCTTACATGGACCTCCTAGCATTTGAGAGGAAACTGGATCAAACCATCATGCGGAAGCGG
GTGGACATCCAGGAGGCCCTGAAGAGGCCCATGAAGCAAAAGCGAAAGCTGCGCCTTTATATCTCCAATA
CTTTTAACCCTGCGAAGCCTGATGCGGAAGACTCTGATGGCAGCATTGCCTCCTGGGAGCTGCGGGTGGA
GGGGAAGCTCTTGGATGATCCTAGTAAGCAGAAGAGGAAGTTTTCTTCCTTCTTCAAGAGTTTGGTCATT
GAGTTGGACAAAGACCTTTATGGCCCAGACAACCACCTTGTTGAGTGGCACCGGACACCCACAACCCAGG
AAACAGATGGGTTCCAAGTGAAGAGACCAGGGGACTTGAGTGTGCGCTGCACCCTGCTCCTGATGCTGGA
CTATCAGCCTCCCCAGTTCAAATTGGACCCCCGCTTAGCCCGGCTGCTGGGGTTACACACACAGAGCCGC
TCAGCCATTGTCCAGGCACTGTGGCAGTATGTGAAGACCAACAGGCTACAGGACTCCCATGACAAGGAGT
ACATCAATGGCGACAAGTATTTCCAGCAGATTTTTGACTGCCCCCGCCTAAAGTTCTCTGAGATTCCCCA
GCGCCTCACAGCCCTGCTGCTGCCCCCTGACCCCATTGTGATCAACCACGTCATCAGCGTGGACCCATCA
GACCAGAAGAAGACAGCGTGCTATGACATAGATGTGGAGGTGGAGGAACCGCTGAAAGGGCAGATGAGTA
GCTTCCTCCTGTCCACGGCCAACCAGCAGGAGATCAGTGCTCTGGACAGTAAGATCCATGAGACGATTGA
GTCCATAAACCAGCTCAAGATCCAGAGGGACTTCATGCTAAGTTTCTCCAGAGACCCCAAAGGCTACGTC
CAAGACCTGCTCCGCTCCCAGAGCCGTGATCTCAAGGTGATGACAGATGTGGCAGGGAACCCCGAGGAAG
AACGCAGGGCTGAGTTCTACCACCAGCCCTGGTCCCAGGAAGCCGTTAGCCGCTACTTCTACTGTAAGAT
CCAGCAGCGCAGGCAGGAGCTGGAGCAGTCGCTGGTCGTGCGCAACACCTAG

Translation (483 aa):
MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAVRPGLAPAGMEPARK
RAAPPPGQSQAQGQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR
VDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPSKQKRKFSSFFKSLVI
ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSR
SAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPS
DQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYV
QDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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