NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 25, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17058.1 Public Mus musculus 2 Zswim3 23 108 98 CCDS HistoryNCBI Gene:67538Re-query CCDS DB by CCDS ID:17058.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052107.4 ENSMUSP00000050970.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052107.4Link to Ensembl Protein Viewer:ENSMUSP00000050970.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000052107Re-query CCDS DB by Protein ID:ENSMUSP00000050970
Original member Current member NCBI NM_178375.2 NP_848462.1 Accepted alive Link to Nucleotide Sequence:NM_178375.2Link to Protein Sequence:NP_848462.1Re-query CCDS DB by Nucleotide ID:NM_178375Re-query CCDS DB by Protein ID:NP_848462Link to BLAST:NP_848462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848462.1 695 Q8CFL8 695 100% 0 0

Chromosomal Locations for CCDS 17058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164805277 164805431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164819757 164821689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGGAGCTAGGCAGCTGCTTTAAGACCTACGAGGACTTCAAGGAGTGTTTCAGCGCCTACAAAAAGGAGA
CCAGGTGCTCCTTCATTGTCAGGGACTGCATCTCCGTCCGCTTCCATAACCTCAACAACGGCACCTCTTT
CCGCGAGGATATCCTATATGTGCAGGTGAAATTTGTCTGTATTCGGACGCAGTCAAACAGGAAGAAAACT
CGGAAGGTGGACAGGTGTCCAGCGTATCTGCTGCTGCAATACAACGAGACTCTAGATAGACTGTTTATCA
GTGAGTTGAATACCCAGCACATTCATGCTGACTCTAATGCTTCTGGAGGAATCCCTGCTAGCAAGCCTCA
GGCAATATGTCTACACAAACTCCCGCCGGTGCAGCTCAGCATCAGGAAAGACCTTGATACAGCAGAGAAG
CCCTCAGTAGAGCCGTCATTTTGCCTCGATAAGATACACAAGCCCTCAAATCCAGAACAGGAGGGCATCA
GTCCTTCTGATATGGCCAAGATAGCAAAAGTGATGAAGAACTTTCTTACCGTGGACGAGGGCTCAATGGC
CTCCTTCAGTGTGGGCACCAGCCAAGACCTAGACCGACTCAGCTTCCAGAGCAGCAAGATGAGTGACCTG
TTCGCCCGATTCCCAGAGACACTCTTGCTGCACCGGGTGGAAAACAGCCAGGGCCATATTCTGTATGCTT
TCTTGGTGGAGAACAAGGAGCGAGAGAGTCGAGTGGTGCACTTCGCTGTGCTCAAGGCTGAGACAGCGCC
TTCTGTGGCCAAGATGCTCAATATCTTTACAGAATTCAACTCTGATTGGCCCAAGGTCAAGATGGTCTTT
GTGGACCCTTCATTCCCTCACCGAGCGATCTTACAGGAGATCTTCCCCTCTGCCCGCACTCTCCTCTCTA
TCTACCACACCACTCGTCTCTTGGAGAAGAAGTTACACCAGAGTTCAGTAAATGCGTCTTTTAAAAGGCT
CATGAAAGAAGCTCTGCGGGAAGCTGTGTTTGTCTCTTCTGATGCAAGCCTAAAAAATCTCTGTGAGATG
TCCCAAGTCCTACTAGATGAGGAACTCTTCAGTTTCCTCCAGGCCCATTGGTTCTCCTGTGAACTGCTGT
GGTACATACATGTGAGGAAGGGCCTGCATGCATGTAACACCTACATGGACAGCCTAGACATAGTCACCAG
CAAGGTGTCAAGCCTCTTTCGGGAACAGCGGTCTCTGCTGGACTGCATCCTTCACTTTGTGGATTACATA
GACTTCTTTAATACCAAAGGTCTGAAGAGCTTGCCCACAAATGCTCCCAAGTTAAGGAGAACTCGGCTCC
CAAGCACGCCTCCAAGGCCCAAGAAGCCTTTTAGAATTTGTGGTGGGGGTGACACCAGGCTCCCTGTGGA
AGAGGTAGAAGAGACAAAGGCAGACTCAGCACAGTCTCAGTTGCCACAGCCCCAGGATCAGTCCTCCAAG
GCTGGCATGCTAGACATCTTGCACCAGAGTGGCTCTGAACTAGCCTACAAGTTGTGTCATAATGAGTGGG
AGGTGGTACAGAATTCCACCCACCTGGTAGACGAGGCCGGCTCCTCAGTGGCTGTTCAGCTGCTAGAGAA
CTCACACCAGGTGAGCAAAGATGGCTGTAGCTGCAGCTGCTCCTTTCAACAGTGCTACCATCTGCCATGC
CGCCACATTTTGGCTCTGTTGCATACCAGCCAGCAGCCAGTAGGGGAAGCCATGGTGTGCTGCCGGTGGC
AGAAGAAATACCAGCACCTCCTTGACCCCAATGGGGAGCTGCAAGACCGTGGAATCATCCCAAACACAGA
TCAGCCTGAAAAGCAAGGTCAGAACCACATGATTCGGGACCTAAGCAGGGAGCTGGCAAACCTGCTGATG
CAGACCGAGGGGCCAGAGCTGGAGGAGCGCTGCTCCACCCTGCGCAAGATTGTGGACATCTGGGCAGACC
CCTATCAGCTGCCTGAGTCCAGTCAGCAGCCAGTTGACTTCAGAGACGTGGGCTGCCTCCCTTTCCTCTG
GGGAAAGCTAGAGGAAGCAGACAGCCCCCCTCTTGCTGAAGCCATGGTTCATGATTGA

Translation (695 aa):
MELGSCFKTYEDFKECFSAYKKETRCSFIVRDCISVRFHNLNNGTSFREDILYVQVKFVCIRTQSNRKKT
RKVDRCPAYLLLQYNETLDRLFISELNTQHIHADSNASGGIPASKPQAICLHKLPPVQLSIRKDLDTAEK
PSVEPSFCLDKIHKPSNPEQEGISPSDMAKIAKVMKNFLTVDEGSMASFSVGTSQDLDRLSFQSSKMSDL
FARFPETLLLHRVENSQGHILYAFLVENKERESRVVHFAVLKAETAPSVAKMLNIFTEFNSDWPKVKMVF
VDPSFPHRAILQEIFPSARTLLSIYHTTRLLEKKLHQSSVNASFKRLMKEALREAVFVSSDASLKNLCEM
SQVLLDEELFSFLQAHWFSCELLWYIHVRKGLHACNTYMDSLDIVTSKVSSLFREQRSLLDCILHFVDYI
DFFNTKGLKSLPTNAPKLRRTRLPSTPPRPKKPFRICGGGDTRLPVEEVEETKADSAQSQLPQPQDQSSK
AGMLDILHQSGSELAYKLCHNEWEVVQNSTHLVDEAGSSVAVQLLENSHQVSKDGCSCSCSFQQCYHLPC
RHILALLHTSQQPVGEAMVCCRWQKKYQHLLDPNGELQDRGIIPNTDQPEKQGQNHMIRDLSRELANLLM
QTEGPELEERCSTLRKIVDIWADPYQLPESSQQPVDFRDVGCLPFLWGKLEEADSPPLAEAMVHD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH