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Report for CCDS21224.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
21224.1 |
Public |
Mus musculus |
7 |
Irf3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:54131](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:21224.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 21224.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000003284.15 |
ENSMUSP00000003284.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000003284.15](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000003284.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000003284](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000003284](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000107834.1 |
ENSMUSP00000103465.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000107834.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000103465.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000107834](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000103465](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000209066.1 |
ENSMUSP00000146773.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000209066.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000146773.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000209066](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000146773](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_016849.4 |
NP_058545.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_016849.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_058545.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_016849](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_058545](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_058545.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_058545.1 |
419 |
P70671 |
419 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 21224.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1260 nt): ATGGAAACCCCGAAACCGCGGATTTTGCCCTGGCTGGTGTCACAGCTGGACCTGGGGCAGCTGGAAGGCG TGGCCTGGCTGGACGAGAGCCGAACGAGGTTCAGGATCCCGTGGAAGCATGGCCTACGGCAGGACGCACA GATGGCTGACTTTGGCATCTTCCAGGCCTGGGCAGAAGCCAGTGGTGCCTACACCCCGGGGAAGGATAAG CCGGACGTGTCAACCTGGAAGAGGAATTTCCGGTCAGCCCTGAACCGGAAAGAAGTGTTGCGGTTAGCTG CTGACAATAGCAAGGACCCTTATGACCCTCATAAAGTGTATGAGTTTGTGACTCCAGGGGCGCGGGACTT CGTACATCTGGGTGCCTCTCCTGACACCAATGGCAAAAGCAGCCTGCCTCACTCCCAGGAAAACCTACCG AAGTTATTTGATGGCCTGATCTTGGGGCCCCTCAAAGATGAGGGGTCCTCAGATCTGGCTATTGTTTCTG ATCCTTCTCAACAACTGCCAAGCCCCAATGTGAACAACTTCCTAAACCCTGCACCCCAAGAAAATCCACT GAAGCAGCTGCTAGCTGAGGAACAATGGGAGTTCGAGGTGACCGCCTTCTACCGAGGCCGCCAGGTCTTC CAGCAGACACTCTTTTGCCCGGGGGGCCTGCGGCTGGTGGGCAGCACAGCTGACATGACACTGCCCTGGC AGCCAGTCACCCTGCCCGATCCTGAGGGGTTTCTGACGGACAAGCTTGTGAAGGAGTACGTGGGGCAGGT GCTCAAAGGGCTGGGCAATGGGCTGGCACTGTGGCAGGCTGGGCAGTGCCTCTGGGCCCAGCGCCTAGGC CACTCCCACGCCTTCTGGGCTCTGGGGGAGGAGCTGCTTCCAGACAGTGGGCGAGGGCCTGATGGAGAGG TCCACAAGGACAAGGACGGAGCCGTGTTCGACCTCAGGCCCTTCGTGGCAGATCTGATTGCCTTCATGGA AGGAAGTGGACACTCCCCACGCTACACTCTGTGGTTCTGCATGGGGGAAATGTGGCCCCAGGACCAGCCA TGGGTCAAGAGGCTTGTGATGGTCAAGGTTGTTCCTACATGTCTTAAGGAGCTGTTAGAGATGGCCCGGG AAGGGGGAGCCTCTTCACTGAAAACCGTGGACTTGCACATCTCCAACAGCCAGCCTATCTCCCTTACCTC TGACCAGTACAAGGCCTACCTCCAGGACTTGGTGGAGGACATGGACTTCCAGGCCACTGGAAATATCTGA
Translation (419 aa): METPKPRILPWLVSQLDLGQLEGVAWLDESRTRFRIPWKHGLRQDAQMADFGIFQAWAEASGAYTPGKDK PDVSTWKRNFRSALNRKEVLRLAADNSKDPYDPHKVYEFVTPGARDFVHLGASPDTNGKSSLPHSQENLP KLFDGLILGPLKDEGSSDLAIVSDPSQQLPSPNVNNFLNPAPQENPLKQLLAEEQWEFEVTAFYRGRQVF QQTLFCPGGLRLVGSTADMTLPWQPVTLPDPEGFLTDKLVKEYVGQVLKGLGNGLALWQAGQCLWAQRLG HSHAFWALGEELLPDSGRGPDGEVHKDKDGAVFDLRPFVADLIAFMEGSGHSPRYTLWFCMGEMWPQDQP WVKRLVMVKVVPTCLKELLEMAREGGASSLKTVDLHISNSQPISLTSDQYKAYLQDLVEDMDFQATGNI
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