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Report for CCDS59625.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
59625.1 |
Public |
Mus musculus |
17 |
Syngap1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:240057](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:59625.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 59625.1 |
This CCDS representation has an inferred exon combination due to a lack of full-length transcript support for this gene in mouse. This is likely to be one of several possible transcript variants for this gene. The exon structure of this representation is supported by human AB067525.2 and rat AF048976.1. |
Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 59625.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000194598.5 |
ENSMUSP00000141686.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000194598.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000141686.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000194598](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000141686](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001281491.2 |
NP_001268420.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001281491.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001268420.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001281491](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001268420](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001268420.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001268420.1 |
1340 |
F6SEU4 |
1340 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 59625.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4023 nt): ATGAGCAGGTCTCGAGCCTCCATCCATCGGGGGAGCATCCCCGCGATGTCCTATGCCCCCTTCAGAGATG TACGGGGACCCCCTATGCACCGAACCCAATACGTTCATTCCCCGTACGATCGTCCTGGCTGGAACCCTCG GTTCTGCATCATCTCGGGGAACCAGCTGCTCATGCTGGATGAGGATGAGATACACCCCCTTCTGATCCGC GACCGGAGGAGCGAGTCCAGCCGAAACAAACTGCTGAGACGCACCGTCTCTGTGCCAGTGGAGGGGCGGC CCCACGGCGAGCATGAATACCACTTGGGTCGCTCGAGGAGGAAGAGTGTCCCAGGGGGGAAACAGTACAG CATGGAGGCCGCCCCCGCTGCGCCCTTCCGGCCCTCGCAAGGCTTCCTGAGCCGGAGGCTAAAAAGCTCT ATCAAACGTACAAAGTCACAACCCAAACTTGACCGGACCAGCAGCTTTCGACAGATCCTGCCTCGCTTCC GAAGTGCTGACCATGACCGGGCCCGGCTGATGCAGAGCTTCAAGGAGTCACATTCCCACGAGTCCCTGCT GAGTCCCAGTAGTGCTGCTGAGGCCTTGGAGCTCAACCTGGATGAAGACTCCATTATCAAGCCAGTACAC AGCTCCATCCTGGGTCAGGAGTTCTGCTTTGAGGTAACAACATCATCTGGAACAAAATGCTTTGCCTGTC GGTCTGCAGCTGAAAGGGACAAATGGATTGAGAATCTGCAGAGGGCTGTAAAACCCAACAAGGACAACAG CCGCCGAGTAGATAACGTGCTGAAGCTATGGATCATAGAGGCTCGAGAGCTGCCCCCCAAGAAGAGATAT TACTGTGAGCTGTGCCTGGACGACATGCTGTATGCACGAACCACCTCCAAGCCCCGCTCGGCTTCAGGAG ACACCGTCTTTTGGGGCGAGCACTTTGAGTTTAACAACCTGCCTGCCGTCCGGGCCCTTCGGCTGCATCT GTACCGTGACTCAGACAAAAAGCGGAAGAAGGACAAGGCTGGCTACGTTGGCCTGGTGACTGTTCCAGTG GCCACCCTAGCTGGGCGCCACTTCACAGAGCAGTGGTACCCCGTGACCTTGCCGACAGGCAGTGGGGGCT CTGGGGGCATGGGCTCGGGGGGAGGAGGAGGGTCAGGGGGTGGCTCAGGGGGCAAAGGGAAAGGAGGTTG TCCTGCTGTGAGACTGAAAGCCCGTTACCAGACGATGAGCATCCTGCCCATGGAGCTGTATAAGGAGTTT GCAGAGTATGTGACCAACCATTACCGGATGCTATGTGCAGTGCTGGAGCCTGCCCTGAATGTCAAAGGCA AGGAAGAGGTGGCCAGTGCACTGGTTCACATCCTGCAGAGCACAGGCAAGGCCAAGGACTTCCTTTCAGA CATGGCCATGTCAGAGGTAGACCGATTCATGGAGCGGGAACACCTCATATTCCGAGAGAACACGCTCGCC ACTAAAGCCATAGAAGAGTATATGAGACTGATTGGCCAGAAATACCTCAAGGATGCCATTGGGGAGTTCA TTCGTGCTCTGTATGAATCTGAGGAGAACTGTGAAGTAGACCCCATCAAGTGCACAGCGTCCAGTCTGGC AGAGCACCAGGCCAACCTGCGGATGTGCTGTGAGTTGGCCCTGTGCAAGGTGGTCAACTCCCATTGCGTG TTCCCGAGGGAGCTGAAGGAGGTGTTTGCATCTTGGCGGCTGCGCTGCGCAGAGCGGGGCCGAGAGGACA TTGCTGACAGGCTGATCAGCGCCTCGCTCTTCCTGCGCTTCCTCTGCCCGGCCATTATGTCGCCCAGTCT ATTTGGGCTTATGCAGGAGTACCCAGATGAGCAGACCTCACGAACCCTCACCCTCATCGCCAAGGTCATC CAGAACCTGGCCAACTTTTCCAAGTTTACCTCAAAGGAGGACTTCCTGGGCTTCATGAATGAGTTTCTGG AGCTGGAGTGGGGCTCTATGCAGCAGTTCTTGTATGAGATATCCAACCTGGACACCTTGACCAACAGCAG CAGTTTTGAGGGCTATATAGACTTGGGCCGCGAGCTCTCCACACTTCACGCCCTGCTCTGGGAGGTGCTG CCCCAGCTCAGCAAGGAAGCCCTCCTGAAGCTGGGCCCACTGCCCCGGCTCCTCAATGACATCAGCACAG CCCTGAGGAACCCTAACATCCAAAGGCAGCCAAGCCGCCAGAGTGAACGGACTCGGTCTCAGCCCATGGT GCTGCGAGGGCCATCAGCCGAGATGCAGGGCTACATGATGCGGGACCTCAATAGCTCCATCGACCTTCAA TCCTTCATGGCTCGAGGCCTCAACAGCTCTATGGACATGGCTCGCCTCCCCTCCCCAACCAAGGAAAAAC CACCACCACCACCACCCGGTGGGGGTAAAGACCTTTTCTATGTGAGCCGGCCACCACTGGCCCGGTCCTC CCCAGCATACTGCACGAGCAGCTCGGACATCACAGAGCCAGAGCAGAAGATGCTGAGTGTCAACAAGAGT GTGTCCATGCTGGACCTTCAGGGCGACGGGCCTGGAGGTCGCCTTAACAGTAGCAGTGTTTCCAACCTGG CAGCTGTTGGGGACTTGTTGCATTCCAGCCAGGCCTCGCTGACAGCAGCTTTGGGGTTGCGGCCTGCACC TGCCGGGCGCCTCTCCCAGGGGAGTGGCTCTTCCATCACAGCAGCTGGCATGCGCCTCAGCCAGATGGGG GTCACTACAGATGGTGTCCCCGCCCAGCAACTGCGCATCCCCCTTTCCTTCCAGAACCCTCTCTTCCATA TGGCTGCTGATGGGCCAGGGCCCCCAGCAGGCCATGGAGGGAGCAGTGGTCATGGTCCACCTTCCTCCCA TCACCACCACCACCACCATCACCACCACCGAGGGGGAGAACCCCCAGGGGACACTTTTGCCCCATTCCAT GGCTATAGCAAGAGCGAGGACCTCTCTTCAGGGGTCCCTAAGCCCCCCGCCGCCTCCATCCTTCACAGCC ACAGCTACAGCGACGAGTTTGGACCCTCTGGCACTGATTTTACCCGCCGGCAGCTCTCGCTTCAGGACAG TCTACAGCACATGCTCTCCCCTCCCCAGATTACCATCGGTCCCCAGAGGCCAGCTCCCTCAGGGCCGGGA GGGGGCAGCGGCGGGGGCAGCGGTGGGGGCCAGCCACCCCCCTTGCAGAGGGGCAAGTCTCAACAGTTGA CAGTGAGTGCCGCCCAGAAACCTCGGCCGTCTAGCGGGAACCTGTTGCAGTCCCCGGAGCCAAGCTACGG ACCTGCCCGTCCTCGGCAGCAGAGCCTCAGCAAAGAGGGCAGCATTGGGGGCAGCGGGGGCAGCGGGGGC GGAGGGGGTGGGGGGCTCAAGCCCTCCATCACCAAGCAGCATTCCCAGACTCCATCCACGCTTAACCCCA CAATGCCAGCCTCGGAGCGGACCGTAGCCTGGGTCTCCAACATGCCTCACCTGTCGGCTGACATCGAGAG TGCACACATCGAGCGAGAAGAGTACAAGCTCAAGGAGTACTCCAAGTCCATGGACGAAAGCCGGCTGGAC AGGGTGAAGGAGTATGAGGAGGAGATACATTCGCTGAAGGAGAGGCTACACATGTCCAACCGGAAGCTGG AAGAGTATGAGCGGAGGTTGCTGTCCCAGGAAGAACAGACCAGCAAGATCCTGATGCAGTACCAAGCCCG CCTGGAGCAGAGTGAGAAGCGCTTGAGACAGCAGCAGGTGGAGAAGGACTCCCAGATCAAGAGCATCATT GGCAGGCTGATGCTGGTGGAGGAGGAGCTGCGTCGGGACCACCCCGCCATGGCTGAGCCGCTGCCTGAGC CCAAGAAGAGGCTGCTCGACGCTCAGGAGAGGCAGCTTCCCCCCTTGGGTCCAACAAACCCGCGTGTGAC GCTGGCCCCACCTTGGAACGGCCTGGCCCCCCCAGCCCCACCCCCCCCACCCCGGCTGCAGATCACAGAG AACGGCGAGTTCCGGAACACCGCAGACCACTAG
Translation (1340 aa): MSRSRASIHRGSIPAMSYAPFRDVRGPPMHRTQYVHSPYDRPGWNPRFCIISGNQLLMLDEDEIHPLLIR DRRSESSRNKLLRRTVSVPVEGRPHGEHEYHLGRSRRKSVPGGKQYSMEAAPAAPFRPSQGFLSRRLKSS IKRTKSQPKLDRTSSFRQILPRFRSADHDRARLMQSFKESHSHESLLSPSSAAEALELNLDEDSIIKPVH SSILGQEFCFEVTTSSGTKCFACRSAAERDKWIENLQRAVKPNKDNSRRVDNVLKLWIIEARELPPKKRY YCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPV ATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEF AEYVTNHYRMLCAVLEPALNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFMEREHLIFRENTLA TKAIEEYMRLIGQKYLKDAIGEFIRALYESEENCEVDPIKCTASSLAEHQANLRMCCELALCKVVNSHCV FPRELKEVFASWRLRCAERGREDIADRLISASLFLRFLCPAIMSPSLFGLMQEYPDEQTSRTLTLIAKVI QNLANFSKFTSKEDFLGFMNEFLELEWGSMQQFLYEISNLDTLTNSSSFEGYIDLGRELSTLHALLWEVL PQLSKEALLKLGPLPRLLNDISTALRNPNIQRQPSRQSERTRSQPMVLRGPSAEMQGYMMRDLNSSIDLQ SFMARGLNSSMDMARLPSPTKEKPPPPPPGGGKDLFYVSRPPLARSSPAYCTSSSDITEPEQKMLSVNKS VSMLDLQGDGPGGRLNSSSVSNLAAVGDLLHSSQASLTAALGLRPAPAGRLSQGSGSSITAAGMRLSQMG VTTDGVPAQQLRIPLSFQNPLFHMAADGPGPPAGHGGSSGHGPPSSHHHHHHHHHHRGGEPPGDTFAPFH GYSKSEDLSSGVPKPPAASILHSHSYSDEFGPSGTDFTRRQLSLQDSLQHMLSPPQITIGPQRPAPSGPG GGSGGGSGGGQPPPLQRGKSQQLTVSAAQKPRPSSGNLLQSPEPSYGPARPRQQSLSKEGSIGGSGGSGG GGGGGLKPSITKQHSQTPSTLNPTMPASERTVAWVSNMPHLSADIESAHIEREEYKLKEYSKSMDESRLD RVKEYEEEIHSLKERLHMSNRKLEEYERRLLSQEEQTSKILMQYQARLEQSEKRLRQQQVEKDSQIKSII GRLMLVEEELRRDHPAMAEPLPEPKKRLLDAQERQLPPLGPTNPRVTLAPPWNGLAPPAPPPPPRLQITE NGEFRNTADH
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