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Report for CCDS20520.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20520.1 Public Mus musculus 6 C1rl 23 108 98 CCDS HistoryNCBI Gene:232371Re-query CCDS DB by CCDS ID:20520.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20520.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049124.9 ENSMUSP00000042883.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049124.9Link to Ensembl Protein Viewer:ENSMUSP00000042883.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000049124Re-query CCDS DB by Protein ID:ENSMUSP00000042883
Original member Current member NCBI NM_181344.5 NP_851989.3 Accepted alive Link to Nucleotide Sequence:NM_181344.5Link to Protein Sequence:NP_851989.3Re-query CCDS DB by Nucleotide ID:NM_181344Re-query CCDS DB by Protein ID:NP_851989Link to BLAST:NP_851989.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851989.3 482 Q3UZ09 482 100% 0 0

Chromosomal Locations for CCDS 20520.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124493151 124493230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124493815 124494043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124505231 124505420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124506892 124506993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124507090 124507164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124508348 124509120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGTCAGGGTTCAGAGGCCTGGTCCCAGAGCTGGAGAACAGCCTATGGAGTTCTCCCACCACAAGCTGCA
TGAGCAAGATGTGCTGGTGGCTCCTTTGGGGAATCCTCCATACTTGCCCCACACAGGCCTCTGTGCTTTT
GGCCCAGCAGTCACCACAGCAACTGACATCCCCTGGATACCCAGAGCCATATCTCAAAGGCCAGGAGAGC
CACACTGACATCGAGGCTCCAGAGGGGTTTGCTGTGAGGCTGACCTTCCAGGACTTTGATCTGGAGCCAT
CCCCAGACTGTGAAGGCGACTCTGTCACAATTTCAACTGGAGGAACAGATGCAACCCGGCTGTGTGGGCG
GCAAGGTTCCCCTCTGGGGAACCCTCCTGGTCACAGGGAGTTTGTATCTTCTGGTAGGAGCCTGCGGCTG
ACCTTCCAGGCACACTCGTCCTCCAAGAGCAAAATCACACACCTCCACAAAGGTTTCCTGGCTCTCTACC
AAGCTGTAGCTGTGAACCAACCCAATGGGGACACCGAGGCTGTCACCACACCCGGAGCTCCCAAGATTCA
GAACCACTGCCAAGATCCTTATTATAAGGCAGACCAGACAGGGACACTTAGCTGCCCATCCTCGTGGAAG
TGGAAGGACAGACAGGATGGAGGAGAGGTTCCTGAATGCGTGCCAGTCTGTGGAAGACCAGTCGTCCCCC
TTGCTGAGAACCCAAACACTTTTGGTTCTTCCCGAGCTAAACTGGGCAACTTCCCCTGGCAAGCCTTCAC
CAGCATCTATGGTCGTGGGGGTGGAGCCCTGCTGGGTGACAGATGGATCCTGACGGCTGCCCATACCATC
TACCCCAAGGATAGCATCTATCTCAGAAGGAACCAGAATGTGGAAGTGTTTCTGGGTCACACAGACATAG
ACGAGCTACTGAAACTCGGGAACCATCCTGTCCGTAGGGTCGTGGTTCACCCAGACTACCGCCAACATGA
GTCCCACAACTTCAATGGAGATATTGCTCTCCTGGAACTTGAGCAGAGAGTCCCTCTGGGGCCCAATCTC
CTCCCAGTCTGTCTGCCGGACAACGAGACCCTCTACCACAGCGGCCTGTGGGGTTACGTCAGTGGGTTTG
GTGTGGAGATGGGCTGGTTAACAACAAAGTTGAAATACTCAAAACTGCCTGTAGCTCCCAGGGAGGCCTG
TGAAGCCTGGCTCCACCAGAGGCAGCGAACTGAGGTGTTTTCTGACAATATGTTCTGTGTTGGGGAAGAG
ATGCAGGTGAACAGTGTCTGCCAGGGAGACAGCGGCAGCGTCTATGTGGTGTGGGACGATCTTGCTCTCC
GCTGGGTGGCCACAGGCATTGTATCCTGGGGCATCGGGTGTGGCAAGGGGTACGGCTTCTACACCAAAGT
GCTCAGCTACATGGATTGGATTAAGAGGGTGATTGAAGGTAAAGACTGA

Translation (482 aa):
MSGFRGLVPELENSLWSSPTTSCMSKMCWWLLWGILHTCPTQASVLLAQQSPQQLTSPGYPEPYLKGQES
HTDIEAPEGFAVRLTFQDFDLEPSPDCEGDSVTISTGGTDATRLCGRQGSPLGNPPGHREFVSSGRSLRL
TFQAHSSSKSKITHLHKGFLALYQAVAVNQPNGDTEAVTTPGAPKIQNHCQDPYYKADQTGTLSCPSSWK
WKDRQDGGEVPECVPVCGRPVVPLAENPNTFGSSRAKLGNFPWQAFTSIYGRGGGALLGDRWILTAAHTI
YPKDSIYLRRNQNVEVFLGHTDIDELLKLGNHPVRRVVVHPDYRQHESHNFNGDIALLELEQRVPLGPNL
LPVCLPDNETLYHSGLWGYVSGFGVEMGWLTTKLKYSKLPVAPREACEAWLHQRQRTEVFSDNMFCVGEE
MQVNSVCQGDSGSVYVVWDDLALRWVATGIVSWGIGCGKGYGFYTKVLSYMDWIKRVIEGKD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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