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Report for CCDS48785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48785.1 Public Mus musculus 11 Grm6 23 108 98 CCDS HistoryNCBI Gene:108072Re-query CCDS DB by CCDS ID:48785.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000631.7 ENSMUSP00000000631.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000631.7Link to Ensembl Protein Viewer:ENSMUSP00000000631.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000000631Re-query CCDS DB by Protein ID:ENSMUSP00000000631
Original member Current member EBI ENSMUST00000171427.7 ENSMUSP00000130728.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171427.7Link to Ensembl Protein Viewer:ENSMUSP00000130728.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171427Re-query CCDS DB by Protein ID:ENSMUSP00000130728
Original member Current member NCBI NM_173372.2 NP_775548.2 Accepted alive Link to Nucleotide Sequence:NM_173372.2Link to Protein Sequence:NP_775548.2Re-query CCDS DB by Nucleotide ID:NM_173372Re-query CCDS DB by Protein ID:NP_775548Link to BLAST:NP_775548.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775548.2 871 Q5NCH9 871 100% 0 0

Chromosomal Locations for CCDS 48785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 50851142 50851627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50853190 50853406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50853965 50854100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50855684 50855838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50856957 50857097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50857200 50857400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50859257 50859402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50859494 50860117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50862977 50863288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 50864461 50864658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGGGGCGGCTCCGAGTGCTGCTGCTGTGGCTAGCCTGGTGGCTGTCGCAGGCGGGCATAGCTCACGGTG
CGGGCTCGGTGCGCCTGGCAGGCGGCCTGACGCTGGGCGGCCTCTTCCCGGTGCACGCCCGGGGCGCCGC
AGGGCGTGCGTGCGGGACGCTGAAGAAGGAGCAGGGAGTGCACCGGCTGGAGGCGATGCTCTACGCGCTG
GACCGCATCAACGCCGACCCGGAGCTCCTGCCCGGTGTGCGACTAGGCGCGCGGCTGCTCGACACCTGCT
CGCGGGACACCTACGCTCTGGAGCAGGCGCTGAGCTTCGTGCAGGCGCTCATCCGAGGCCGCGGAGACGG
CGAAGAGGCCAGCGTGCGCTGCCCTGGGGGCGTCCCCCCGCTGCGCGCCGCGCCTCCTGAACGCGTCGTG
GCGGTGGTGGGCGCCTCAGCTAGCTCCGTGTCCATCATGGTCGCCAATGTCTTGCGCCTGTTTGCGATAC
CCCAGATCAGCTATGCCTCCACAGCCCCAGAGCTCAGTGACTCCACACGCTATGACTTCTTCTCCCGAGT
GGTGCCTCCTGACTCCTACCAGGCGCAGGCCATGGTGGACATTGTGCGGGCACTGGGATGGAATTACGTG
TCTACACTGGCCTCTGAGGGCAACTATGGTGAAAGCGGGGTTGAGGCCTTTGTGCAGATCTCCCGTGAGG
CTGGAGGTGTCTGTATTGCCCAATCAATAAAGATTCCCAGGGAACCAAAGCCAGGAGAATTCCACAAAGT
GATCCGGAGGCTCATGGAGACACCCAACGCCCGGGGCATCATCATCTTTGCCAATGAAGATGACATCAGG
AGGGTCTTGGAGGCAACACGCCAGGCAAACCTGACTGGCCACTTCCTGTGGGTTGGCTCAGACAGCTGGG
GATCCAAGATCTCTCCCATCTTGAACCTAGAGGAAGAGGCTGTGGGGGCCATCACCATCTTGCCCAAAAG
GGCTTCAATCGACGGATTTGACCAATACTTTATGACTCGTTCCCTGGAGAACAACCGCAGAAACATCTGG
TTTGCTGAGTTCTGGGAAGAGAATTTTAACTGCAAACTAACCAGCTCAGGTGGCCAGTCAGATGATTCCA
CCCGGAAATGCACAGGCGAGGAACGCATCGGCCAGGACTCCACCTATGAACAGGAGGGGAAGGTGCAGTT
CGTGATAGATGCTGTGTATGCCATCGCTCATGCTCTGCACAGCATGCACCAAGCACTCTGCCCAGGCCAC
ACAGGTCTGTGCCCAGCCATGGAGCCTACTGATGGCCGGACCCTGCTGCACTACATCCGAGCAGTCCGCT
TCAATGGTAGCGCAGGAACCCCAGTGATGTTCAATGAGAATGGGGATGCCCCCGGGCGCTATGACATCTT
CCAGTACCAAGCAACCAATGGAAGTGCCAGCAGTGGCGGGTACCAGGCTGTGGGCCAATGGGCAGAGGCC
CTTAGACTGGATATGGAAGCTCTACAGTGGTCAGGCGACCCCCATGAGGTGCCCCCTTCTCAATGCAGCC
TCCCCTGTGGGCCTGGTGAACGGAAAAAGATGGTGAAGGGTGTGCCCTGCTGTTGGCACTGTGAGGCCTG
CGACGGGTACCGCTTCCAGGTGGACGAGTTCACGTGTGAGGCCTGTCCAGGGCACATGAGACCGACACCC
AACCACACTGGCTGCCGTCCCACTCCCGTGGTGCGCCTGACCTGGTCCTCTCCGTGGGCCGCTCTGCCCC
TTCTCCTGGCTGTCCTGGGCATCATGGCCACCACAACTATCATTGCTACCTTCATGCGACACAACGACAC
TCCCATAGTCCGCGCCTCTGGCCGTGAGCTTAGCTATGTGCTGCTCACCGGCATCTTCCTGATCTACGCC
ATCACCTTCCTCATGGTAGCCGAGCCTTGTGCAGCCGTCTGTGCTTCCCGAAGACTCTTGCTCGGCTTGG
GTACCACGCTCAGCTACTCTGCCCTGCTCACCAAGACCAACCGCATCTACCGCATTTTCGAGCAAGGGAA
GCGCTCTGTCACGCCGCCACCCTTCATCAGCCCCACCTCGCAGCTAGTCATCACCTTCGGCCTTACCTCC
CTGCAGGTAGTGGGAGTGATAGCGTGGTTGGGGGCCCAACCTCCACACAGCGTGATTGACTATGAGGAAC
AGAGGACGGTGGACCCTGAGCAAGCCAGGGGTGTGCTCAAGTGTGACATGTCTGATCTGTCCCTCATTGG
CTGCCTGGGGTACAGTCTCCTGCTCATGGTCACGTGTACGGTGTATGCCATCAAGGCCCGAGGTGTGCCA
GAGACCTTCAATGAAGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATTATCTGGCTGGCTTTCG
TCCCCATCTTCTTTGGCACCGCCCAGTCAGCTGAGAAGATCTACATCCAAACGACCACACTGACTGTGTC
CCTGAGCCTGAGCGCGTCGGTGTCCCTCGGCATGCTCTATGTGCCCAAAACCTACGTCATCCTGTTCCAT
CCAGAGCAGAACGTGCAGAAGCGGAAGCGCAGCCTCAAGAAGACCTCCACGATGGCGGCCCCGCCCAAGA
GCGAGAACTCAGAGGACGCCAAGTAG

Translation (871 aa):
MGRLRVLLLWLAWWLSQAGIAHGAGSVRLAGGLTLGGLFPVHARGAAGRACGTLKKEQGVHRLEAMLYAL
DRINADPELLPGVRLGARLLDTCSRDTYALEQALSFVQALIRGRGDGEEASVRCPGGVPPLRAAPPERVV
AVVGASASSVSIMVANVLRLFAIPQISYASTAPELSDSTRYDFFSRVVPPDSYQAQAMVDIVRALGWNYV
STLASEGNYGESGVEAFVQISREAGGVCIAQSIKIPREPKPGEFHKVIRRLMETPNARGIIIFANEDDIR
RVLEATRQANLTGHFLWVGSDSWGSKISPILNLEEEAVGAITILPKRASIDGFDQYFMTRSLENNRRNIW
FAEFWEENFNCKLTSSGGQSDDSTRKCTGEERIGQDSTYEQEGKVQFVIDAVYAIAHALHSMHQALCPGH
TGLCPAMEPTDGRTLLHYIRAVRFNGSAGTPVMFNENGDAPGRYDIFQYQATNGSASSGGYQAVGQWAEA
LRLDMEALQWSGDPHEVPPSQCSLPCGPGERKKMVKGVPCCWHCEACDGYRFQVDEFTCEACPGHMRPTP
NHTGCRPTPVVRLTWSSPWAALPLLLAVLGIMATTTIIATFMRHNDTPIVRASGRELSYVLLTGIFLIYA
ITFLMVAEPCAAVCASRRLLLGLGTTLSYSALLTKTNRIYRIFEQGKRSVTPPPFISPTSQLVITFGLTS
LQVVGVIAWLGAQPPHSVIDYEEQRTVDPEQARGVLKCDMSDLSLIGCLGYSLLLMVTCTVYAIKARGVP
ETFNEAKPIGFTMYTTCIIWLAFVPIFFGTAQSAEKIYIQTTTLTVSLSLSASVSLGMLYVPKTYVILFH
PEQNVQKRKRSLKKTSTMAAPPKSENSEDAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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