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Report for CCDS37512.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
37512.1 |
Public |
Mus musculus |
17 |
Fam234a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:106581](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:37512.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 37512.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000114988.7 |
ENSMUSP00000110639.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000114988.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000110639.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000114988](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000110639](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000118487.7 |
ENSMUSP00000113418.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000118487.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000113418.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000118487](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000113418](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000234175.1 |
ENSMUSP00000157032.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000234175.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000157032.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000234175](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000157032](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000234262.1 |
ENSMUSP00000157155.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000234262.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000157155.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000234262](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000157155](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000234687.1 |
ENSMUSP00000157219.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000234687.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000157219.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000234687](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000157219](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000234554.1 |
ENSMUSP00000157362.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000234554.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000157362.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000234554](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000157362](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001206335.1 |
NP_001193264.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001206335.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001193264.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001206335](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001193264](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001206335.2 |
NP_001193264.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001206335.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001193264.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001206335](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001193264](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001193264.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001357894.1 |
NP_001344823.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001357894.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001344823.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001357894](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001344823](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001357894.2 |
NP_001344823.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001357894.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001344823.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001357894](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001344823](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001344823.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_207217.4 |
NP_997100.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_207217.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_997100.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_207217](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_997100](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_207217.5 |
NP_997100.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_207217.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_997100.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_207217](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_997100](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_997100.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 37512.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1668 nt): ATGATGGACAACAAGGACTTAGAAGCTGAAATACACCCCTTGAAGAATGAGGACAAGAAATCACAGGAAA ACCCAGGAAACCTACCAAGAAACGAAGATAACTTGAAGAGCAAGCCTGTGCCTTCCCGCTTGTCCCGGTG CCGCACAGTGGCATTTTTCCTTTCCCTGTTCACCTGCCTCTTCGTGGTGTTTGTCCTGTCTTTCATCATC CCATGTCCAGACCGTCCCTCCTCACAGGGCACGTGGAAGCTTGACTACAACAATGCAGTCATGTACGACT TCCTGGCTCTGGGAGACATAAACAAGGACAAGGTTCAGGACGTTCTTTTTCTTTACAAAAATACCAACAG CAGTAACAATCTCACCAGATCCTGTGCTGATGAAGGCTTTTCCACTCCTTGTGCCTTTGTGGTTGCGGTG TCAGGAGCCAATGGCAGCGTGCTCTGGGAGAGACCCGTGGCCCAAGATGTCGCCCTTGTAAAGTGTGCCA TGCCACAGACACTGGACAGTGACGAGGTGTCTTCTGCCTGTATCGTTGTGGGAAGAGCTGGTTCTTTCGT TGCGGTCAGCTTTTTTACAGGAGAAACCCTGTGGAGCCATCCCAGCAGCTTTAGTGGGAACGTTTCCATC CTGAGCCCTCTGCTCCAGGTGCCTGACATTGATGGTGATGGTGACGGTACTCCAGACCTCCTGATCCTCG CCCAGGAGGGACAGGAGGTCAGTGGAGCTCTCTATTCAGGTAGCACTGGGTACCAGATTGGCCACAGAGG CAGCCTTGGTGTGGATGGAGATGGTGTCGCCCTCCTTCATGTGACCAGAACTGGTGCTCAGTATATTCTC CTGCCCTGTGCAAGTGCCCTCTGTGGCTTCTCTGTGAAGAGTCTCTATGAGAGAATTACTGGGCGAGATG GCCATTTTAAGGAAGACCCCTACTGGGAGAACATGCTCAATCACTCTGTCCACAGGAGGCTTCTGCACAG ACTTGGAGCAGTTCGCTACCTGATGAATATCCCAGGGAAAGCTGGCCAGGACTTGCTCCTTGTGACCTCT GAGGCCTGCGTGTTGCTGGATGGACAGGATCTGGAGCCCAGGTGGACCCTTGGTGAAGTTCAGGTTCTGA GAAAACCTATCCTTGGCCACTACAAACCTGACACCTTGGCTGTGGTCATTGAGAATGGAACCAGCATTGA TAGACAGATCCTACTTCTGGACCTCAGTACTGGGTCTATCCTGTGGAGCCAGCCCCTCCCAAGCCTGCCT GGGGGCCCACCATCCACAAGCCTGATGACTGCAGACCACCGCTCAGCCTTCTTCTTCTGGGGCCTCCATG ATCTTGTGAGCACTAATGAGATGGATCCCCCGGATGTGCAGCACAGTCTGTATATGTTCCACCCGACCCT GCCTGGCATCCTGCTGGAGCTAGCCAACGTGTCTGCCAACATCGTGGCCTTTGATGCCGTCCTGCTTGAG CCAAGCCGCCATGCTGCCTATGTGCTCCTGACGGGCCCAGCAAGCTCAGATGTGCCTGGCCTGGTCTCTG TCACCAAACACAAAGTGCAAGACCTTGTCCCAGGCAGTAGAGTGATCCACTTGGGTGAAGGCAGCTCAGA CAGCGACCAGGCTATCCGGGACCGGTTCTCCCGACTACGGTACCGGAGTGAGATGTAG
Translation (555 aa): MMDNKDLEAEIHPLKNEDKKSQENPGNLPRNEDNLKSKPVPSRLSRCRTVAFFLSLFTCLFVVFVLSFII PCPDRPSSQGTWKLDYNNAVMYDFLALGDINKDKVQDVLFLYKNTNSSNNLTRSCADEGFSTPCAFVVAV SGANGSVLWERPVAQDVALVKCAMPQTLDSDEVSSACIVVGRAGSFVAVSFFTGETLWSHPSSFSGNVSI LSPLLQVPDIDGDGDGTPDLLILAQEGQEVSGALYSGSTGYQIGHRGSLGVDGDGVALLHVTRTGAQYIL LPCASALCGFSVKSLYERITGRDGHFKEDPYWENMLNHSVHRRLLHRLGAVRYLMNIPGKAGQDLLLVTS EACVLLDGQDLEPRWTLGEVQVLRKPILGHYKPDTLAVVIENGTSIDRQILLLDLSTGSILWSQPLPSLP GGPPSTSLMTADHRSAFFFWGLHDLVSTNEMDPPDVQHSLYMFHPTLPGILLELANVSANIVAFDAVLLE PSRHAAYVLLTGPASSDVPGLVSVTKHKVQDLVPGSRVIHLGEGSSDSDQAIRDRFSRLRYRSEM
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