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Report for CCDS12425.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
12425.1 |
Public |
Homo sapiens |
19 |
SLC7A9 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:11136](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:12425.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:11136](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 12425.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000023064.9 |
ENSP00000023064.3 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000023064.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000023064.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000023064](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000023064](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000590341.5 |
ENSP00000464822.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000590341.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000464822.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000590341](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000464822](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000587772.1 |
ENSP00000468439.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000587772.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000468439.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000587772](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000468439](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001126335.2 |
NP_001119807.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001126335.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001119807.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001126335](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001119807](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001119807.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001243036.2 |
NP_001229965.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001243036.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001229965.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001243036](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001229965](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001229965.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_014270.5 |
NP_055085.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_014270.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_055085.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_014270](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_055085](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_055085.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 12425.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1464 nt): ATGGGGGATACTGGCCTGAGAAAGCGGAGAGAGGATGAGAAGTCGATCCAGAGCCAAGAGCCTAAGACCA CCAGTCTCCAAAAGGAGCTGGGCCTCATCAGTGGCATCTCCATCATCGTGGGCACCATCATTGGCTCTGG GATCTTCGTTTCCCCCAAGTCTGTGCTCAGCAACACGGAAGCTGTGGGGCCCTGCCTCATCATATGGGCG GCTTGCGGGGTCCTCGCGACGCTGGGTGCCCTGTGCTTTGCGGAGCTTGGCACAATGATCACCAAGTCAG GGGGAGAGTATCCCTACCTGATGGAGGCCTACGGGCCCATCCCCGCCTACCTCTTCTCCTGGGCCAGCCT GATCGTCATTAAGCCCACGTCCTTCGCCATCATCTGCCTCAGCTTCTCCGAGTATGTGTGTGCGCCCTTC TATGTGGGCTGCAAGCCTCCTCAAATCGTTGTGAAATGCCTGGCCGCCGCCGCCATCTTGTTCATCTCGA CAGTGAACTCACTGAGCGTGCGGCTGGGAAGCTACGTCCAGAACATCTTCACCGCGGCCAAGCTGGTGAT CGTGGCCATCATCATCATCAGCGGGCTGGTGCTCCTGGCCCAAGGAAACACAAAGAATTTTGATAATTCT TTCGAGGGCGCCCAGCTGTCTGTGGGAGCCATCAGCCTGGCGTTTTACAATGGACTCTGGGCCTATGATG GATGGAATCAACTCAATTACATCACAGAAGAACTTAGAAACCCTTACAGAAACCTGCCTTTGGCCATTAT CATCGGGATCCCCCTGGTGACGGCGTGCTACATCCTCATGAACGTGTCCTACTTCACCGTGATGACTGCC ACCGAACTCCTGCAGTCCCAGGCGGTGGCTGTGACATTTGGTGACCGTGTTCTCTATCCTGCTTCTTGGA TCGTTCCACTTTTTGTGGCATTTTCAACCATCGGTGCTGCTAACGGGACCTGCTTCACAGCGGGCAGACT CATTTACGTGGCGGGCCGGGAGGGTCACATGCTCAAAGTGCTTTCTTACATCAGCGTCAGGCGCCTCACT CCAGCCCCCGCCATCATCTTTTATGGTATCATAGCAACGATTTATATCATCCCTGGTGACATAAACTCGT TAGTCAATTATTTCAGCTTTGCCGCATGGCTGTTTTATGGCCTGACGATTCTAGGACTCATCGTGATGAG ATTTACAAGGAAAGAGCTGGAAAGGCCTATCAAGGTGCCCGTAGTCATTCCCGTCTTGATGACACTCATC TCTGTGTTTTTGGTTCTGGCTCCAATCATCAGCAAGCCCACCTGGGAGTACCTCTACTGTGTGCTGTTTA TATTAAGCGGCCTTTTATTTTACTTCCTGTTTGTCCACTACAAGTTTGGATGGGCTCAGAAAATCTCAAA GCCGATTACCATGCACCTTCAGATGCTAATGGAAGTGGTCCCACCGGAGGAAGACCCTGAGTAA
Translation (487 aa): MGDTGLRKRREDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWA ACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPF YVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNS FEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTA TELLQSQAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLT PAPAIIFYGIIATIYIIPGDINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLI SVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYKFGWAQKISKPITMHLQMLMEVVPPEEDPE
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