NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17059.1 Public Mus musculus 2 Zswim1 23 108 98 CCDS HistoryNCBI Gene:71971Re-query CCDS DB by CCDS ID:17059.1Re-query CCDS DB by GeneID:71971See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017908.2 ENSMUSP00000017908.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017908.2Link to Ensembl Protein Viewer:ENSMUSP00000017908.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017908Re-query CCDS DB by Protein ID:ENSMUSP00000017908
Original member NCBI NM_028028.2 NP_082304.1 Updated not alive Link to Nucleotide Sequence:NM_028028.2Link to Protein Sequence:NP_082304.1Re-query CCDS DB by Nucleotide ID:NM_028028Re-query CCDS DB by Protein ID:NP_082304
Current member NCBI NM_028028.3 NP_082304.1 Accepted alive Link to Nucleotide Sequence:NM_028028.3Link to Protein Sequence:NP_082304.1Re-query CCDS DB by Nucleotide ID:NM_028028Re-query CCDS DB by Protein ID:NP_082304Link to BLAST:NP_082304.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082304.1 455 Q9CWV7 455 100% 0 0

Chromosomal Locations for CCDS 17059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164824830 164826197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGCCCTCACGATGCTGAATGGTCTACTCATTAAGGACTCCAGCCCACCTATGCTGCACCAGATTAGCA
AG
ACTCCTCAGCTAGATGCCTTCAACTACCAAAGCTGCTTCATGCAAGACCTCTTTGCTCATTTCCCTGA
G
GTCTTATTTATCCACCGGACCTATAACCCAAGAGGCAAGGTGTTGTACACCTTCCTGGTAGATGGACCC
CGG
GTCCAGGTTGAGGGTCCTCTTGCCCGAGCTGTGTACTTTGCCATCCCTACCAATGAAGATGCCAGAG
GC
CTGGCCCAGATGTTCCAGGTGTTCAAAAAGTTTAACCCAGCATGGGAGAGAGTCAATACCATCCTGGT
G
GACCCCCACTTCCTCCTGCTGCCCACCCTGACCATGGAGTTCCCCACCGCTGAGGTCTTGCTCTCTGCC
TTC
CACATCTGCAAGTTCCTCCAGGGTAAATTCTATCAGCTGCCGTTGGAGCAGCCTGTCCAGAGGCTGC
TT
CTGTCCTCCCTGCAGAGCACGATGTGCTCAGCCACAGCTGGCAACCTGAGGAAGCTGTACACGCTCCT
G
AATAACTGCATCCCCTCCAGCAGGCTGCCGGAGCTCCACTCACACTGGCTGCTCAATGACCGCATCTGG
CTG
GCCCACCGCTGGAGGAGCCGCGCCCAGAGCAGCCGCTACTTCCAGAGTCTGGAGATCATGGCCCACA
TC
CTCAGCCAGTTTTTTGGCACCACCCCATTTGAGAAACAGGGTATGGCGTCTGTGTTCCGATACATGCA
G
CAGAACTCTTCGGACAAAGCCAGCCTCAGCCTGGCCGAGACACCCCAGGACAGTCACACTCCTTCAGAG
GCC
AGCGCTGAAAACCCCAACACAGAGCAGTTGGTGGAAGCCCGTATCCAGCACTCCCTCAACGCCATCT
GC
ACGGGGCCAGCCGCCCAGCTTTGCCTAGGCGAGCTTGCGGTCGTCCAGAAATCCATGCACCTCATTGG
C
TCCGGCTCCGAGAAGATGAGCATCCAGATTCTGGAGGACACGCACACCGTCCAGCCCCAGCCCCCCGCC
AGC
TGCAGCTGCTACTTTAACCAAGCCTTCCACCTGCCCTGCCGCCACATCCTAGCCATGCTCAGTGCCC
GC
CAGCAGGTACTCCAGCCCGACATGCTGCCCGCTCAGTGGACCTCGGGCTGTGCCTCCAGTCTAGACAG
T
ATCCTAGGCAGCAAGTGGAGTGCCAGCCTGGATAAGCACCTGGCTGTGACTCTGCTCACTGAAGAGGTG
GGT
CGGCTCTTACAGCACTGCAGCGAGGAGGAGTTCGAGCGTCGCTACAGCACCCTCCGGGAACTGGCCG
AC
AACTGGATCGGCCCTTATGAGCAGGTACAGCTCTAA


Translation (455 aa):
MALTMLNGLLIKDSSPPMLHQISKTPQLDAFNYQSCFMQDLFAHFPEVLFIHRTYNPRGKVLYTFLVDGP
R
VQVEGPLARAVYFAIPTNEDARGLAQMFQVFKKFNPAWERVNTILVDPHFLLLPTLTMEFPTAEVLLSA
F
HICKFLQGKFYQLPLEQPVQRLLLSSLQSTMCSATAGNLRKLYTLLNNCIPSSRLPELHSHWLLNDRIW
L
AHRWRSRAQSSRYFQSLEIMAHILSQFFGTTPFEKQGMASVFRYMQQNSSDKASLSLAETPQDSHTPSE
A
SAENPNTEQLVEARIQHSLNAICTGPAAQLCLGELAVVQKSMHLIGSGSEKMSIQILEDTHTVQPQPPA
S
CSCYFNQAFHLPCRHILAMLSARQQVLQPDMLPAQWTSGCASSLDSILGSKWSASLDKHLAVTLLTEEV
G
RLLQHCSEEEFERRYSTLRELADNWIGPYEQVQL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser