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Report for CCDS16165.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
16165.1 |
Public |
Mus musculus |
2 |
Cwc22 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:80744](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:16165.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:80744](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 16165.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000065889.9 |
ENSMUSP00000064947.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000065889.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000064947.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000065889](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000064947](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000111821.8 |
ENSMUSP00000107452.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000111821.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000107452.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000111821](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000107452](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001362658.1 |
NP_001349587.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001362658.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349587.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362658](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349587](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
|
NCBI |
NM_001362658.2 |
NP_001349587.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001362658.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349587.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362658](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349587](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001362658.3 |
NP_001349587.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001362658.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001349587.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001362658](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001349587](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001349587.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_030560.5 |
NP_085037.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_030560.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_085037.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_030560](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_085037](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
|
NCBI |
NM_030560.6 |
NP_085037.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_030560.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_085037.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_030560](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_085037](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_030560.7 |
NP_085037.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_030560.7](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_085037.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_030560](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_085037](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_085037.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 16165.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2727 nt): ATGAAAAGTAGTGTGGCACACATGAAGTCCTCTGGTCACAACAGAAGGGAGACCCACAGTTCATACCGCC GGAGCTCCTCCCCAGAAGACAGATACACAGAGCAAGAGCGGTCCCCCCGGGATAGAGGTTACTCTGATTA CAGCCGGTCAGACTATGAGCGATCTAGAAGAGGATACTCTTACGATGACAGCATGGAATCACGAAGTAGG GACCGAGAAAAACGCAGAGAGAGAGAGAGAGATGCAGATCATCGGAAACGGTCCCGGAAATCGCCATCCC CTGACAGGAGTCCAGCCCGAGGCGGAGGGCAGAGTTCTCCTCAGGAGGAACCGACATGGAAGAAGAAGAA GGATGAGCTGGACCCGCTGCTCACCCGCACTGGGGGAGCGTATATCCCTCCTGCGAAGCTCAGGATGATG CAGGAGCAGATCACAGATAAAAGCAGCTTAGCATATCAGAGGATGAGCTGGGAGGCTCTGAAGAAATCCA TCAATGGTCTCATCAACAAGGTCAACATCTCTAATATAAGCATTATTATCCAAGAGCTCCTTCAAGAGAA CATTGTCAGAGGGAGAGGATTGCTGTCCAGATCTGTTCTGCAAGCCCAGAGTGCGTCTCCAATCTTCACT CACGTTTATGCAGCTTTGGTGGCAATAATCAACTCAAAATTCCCACAGATTGGAGAATTGATCCTCAAGA GACTAATTCTTAATTTTCGGAAAGGCTATCGAAGGAACGATAAGCAACTTTGCCTGACTGCTTCAAAATT TGTGGCACATCTTATTAACCAAAATGTGGCACATGAGGTTCTGTGCCTGGAGATGCTCACTTTGCTACTA GAGAGACCAACAGATGACAGTGTTGAAGTAGCTATCGGCTTCCTCAAAGAGTGTGGTCTCAAATTAACCC AGGTGTCACCAAGGGGAATTAATGCAATCTTTGAACGCCTTCGAAACATTCTACACGAGTCTGAGATCGA CAAAAGAGTTCAGTACATGATTGAAGTGATGTTTGCTGTACGGAAGGATGGATTCAAGGACCACCCTGTT ATTCTGGAAGGACTTGATTTAGTGGAAGAGGACGATCAGTTTACACATATGCTCCCCTTAGAGGATGACT ACAATCCAGAAGATGTTCTTAATGTTTTCAAGATGGATCCTAATTTTATGGAGAATGAAGAGAAGTACAA GGCTATTAAAAAAGAAATCCTTGACGAAGGAGACAGTGATTCAAACACAGACCAAGGAGCTGGAAGTAGT GAAGATGAGGAGGAGGAAGACGAGGAGGAGGAAGGAGAAGACGAGGAAGGAGGGCAAAAAGTAACTATTC ATGACAAAACAGAAATCAACCTAGTCTCGTTTCGCCGTACAATCTATCTTGCCATTCAGTCAAGTTTAGA TTTTGAAGAATGTGCACACAAGTTGCTGAAAATGGAGTTTGCAGAGAGCCAAACAAAAGAACTCTGCAAC ATGATACTTGATTGCTGTGCCCAACAAAGGACCTATGAAAAATTTTTTGGCTTGTTAGCTGGGCGGTTTT GTATGCTGAAAAAGGAATACATGGAATCATTTGAAAGTATATTCAAGGAACAGTACGACACCATCCATCG CTTAGAGACAAACAAATTGAGAAATGTTGCTAAAATGTTTGCTCACCTTTTATACACAGATTCACTTCCG TGGAGTGTTCTCGAATGTATAAAACTGAGTGAAGAGACCACGACATCGTCTAGTCGAATTTTTGTCAAGA TCTTCTTCCAGGAACTGTGTGAATACATGGGTCTTCCTAAACTGAATGCGAGGTTGAAGGATGAAACTCT CCAGCCATTCTTTGAAGGTCTGTTACCCAGAGACAACCCACGCAATACCCGGTTTGCCATCAACTTCTTC ACTTCCATAGGTCTCGGAGGATTGACGGATGAACTGCGAGAACATCTGAAAAATACGCCCAAGGTCATCG TAGCCCAGAAACCAGAAGCTGAACAAAAGAAACCAGCCCTGACATCTTCATCTTCAGAGTCTTCCTCGGC GTCTGATTCCTCTGACTCAGAATCTGACAGCAGCGAGAGCAGCTCAGAGTCCTCTAGTGATGCGAGCGAC TCCTCCTCCTCCTCCAGCACTCAGAGCTCTACCTCAGGTATCACGGCTCATTCAGCTAAAGGTACAAGAA AGAAGAGACAAGGGAAGGCCAGAGGCGAAGAAGTTGATAAGTTAGCCAGGGGCCACCAGGCACTTGAGCG GAGGCGAGAAGGAGGCAGGGAGGACCAAAGGCACCAGGAAGGGAGGACTGAGAGAGCAAGGTCTGAAAGA CGCAGAGCTCAGAACTCACGAGATGCAGACTGGAGAGATCCCCTAGCAAAGCACATAGACGACAGAAGCC ATGAGAATAGTCACAGCAGAGTTGGCAATGGCCGAGAACAAGGCTCACACAGAGAGCCAGAAGACAGGCA TGGCGAGCCAAAGAAGCGGAGAGAGAGAAGAGATTCTTTTTCTGAAAATGAGAAGCAAAGAAGCCGAAAT CAGGACAGTGATAATGTTAGAAGAAAAGATCGCTCCAAGTCAAGGGAGAGGAGTAGAAGGCATTCTGGTC ACAAGGGAGACGACGCCAGGTGTCAGAACAGTGCAGAGAGGCGCTGGGAAAAGCCTGGCAGACGCCCTGA ACAGTCTAGAGAGTCAAAGAGAAGTCAGGACCGGAGGAGAGAAAAGTCTCCAACAACACAGAAATAA
Translation (908 aa): MKSSVAHMKSSGHNRRETHSSYRRSSSPEDRYTEQERSPRDRGYSDYSRSDYERSRRGYSYDDSMESRSR DREKRRERERDADHRKRSRKSPSPDRSPARGGGQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMM QEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFT HVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLL ERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPV ILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSS EDEEEEDEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCN MILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF TSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKPALTSSSSESSSASDSSDSESDSSESSSESSSDASD SSSSSSTQSSTSGITAHSAKGTRKKRQGKARGEEVDKLARGHQALERRREGGREDQRHQEGRTERARSER RRAQNSRDADWRDPLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKRRERRDSFSENEKQRSRN QDSDNVRRKDRSKSRERSRRHSGHKGDDARCQNSAERRWEKPGRRPEQSRESKRSQDRRREKSPTTQK
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