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Report for CCDS8447.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8447.1 Public Homo sapiens 11 PANX3 14 105 73 CCDS HistoryNCBI Gene:116337Re-query CCDS DB by CCDS ID:8447.1Re-query CCDS DB by GeneID:116337

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Sequence IDs included in CCDS 8447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member EBI ENST00000284288 ENSP00000284288 Accepted not alive Link to Ensembl Transcript Viewer:ENST00000284288Link to Ensembl Protein Viewer:ENSP00000284288Re-query CCDS DB by Nucleotide ID:ENST00000284288Re-query CCDS DB by Protein ID:ENSP00000284288
Original member Current member EBI OTTHUMT00000387064 OTTHUMP00000231522 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000387064Link to Vega Protein Viewer:OTTHUMP00000231522Re-query CCDS DB by Nucleotide ID:OTTHUMT00000387064Re-query CCDS DB by Protein ID:OTTHUMP00000231522
Original member NCBI NM_052959.2 NP_443191.1 Accepted not alive Link to Nucleotide Sequence:NM_052959.2Link to Protein Sequence:NP_443191.1Re-query CCDS DB by Nucleotide ID:NM_052959Re-query CCDS DB by Protein ID:NP_443191Link to BLAST:NP_443191.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443191.1 392 Q96QZ0 392 100% 0 0

Chromosomal Locations for CCDS 8447.1

Assembly GRCh37.p13 (GCF_000001405.25)

On '+' strand of Chromosome 11 (NC_000011.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

Chromosome Start Stop Links
11 124481453 124481633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 124482876 124483018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 124487170 124487384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 124489192 124489831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGTCACTTGCACACACAGCTGCAGAGTACATGCTCTCAGATGCCCTGCTGCCTGACCGCAGGGGACCCC
GCCTCAAAGGACTGCGTCTGGAACTGCCCCTGGACCGGATAGTCAAGTTCGTAGCTGTGGGCTCCCCCTT
GTTGCTGATGTCCCTGGCATTCGCCCAGGAGTTCTCCTCTGGGTCTCCGATCAGCTGCTTCTCTCCCAGT
AACTTCAGCATCCGGCAGGCAGCCTACGTGGACAGCTCCTGCTGGGACTCACTGCTTCACCATAAGCAGG
ACGGGCCTGGCCAGGACAAAATGAAATCTCTCTGGCCCCACAAGGCCCTCCCCTACTCCCTGCTGGCCCT
GGCCTTGCTCATGTACCTGCCGGTGCTGCTGTGGCAGTATGCAGCTGTGCCAGCCCTCAGCTCCGATCTG
CTGTTCATCATCAGCGAACTGGACAAATCTTATAATCGCTCCATCCGCCTCGTGCAGCACATGCTGAAGA
TCCGGCAGAAGAGTTCCGACCCCTATGTGTTCTGGAATGAGCTGGAGAAGGCTCGGAAAGAACGATACTT
TGAATTCCCTTTGCTAGAGCGGTACCTGGCATGTAAGCAGCGTTCACATTCGCTAGTGGCTACCTACCTC
CTGAGGAACTCCCTCTTGCTCATCTTCACCTCCGCCACTTACCTATACCTTGGTCATTTCCATCTGGATG
TCTTCTTCCAGGAAGAATTCAGCTGCTCCATCAAGACAGGGCTGCTAAGTGATGAGACCCATGTCCCCAA
TCTGATCACATGCAGGCTGACATCACTGTCCATTTTCCAGATTGTTAGCCTCTCCAGTGTAGCAATATAC
ACCATATTGGTTCCAGTGATAATATACAACCTCACACGGCTATGTCGGTGGGACAAACGACTTTTATCTG
TCTATGAGATGCTCCCAGCTTTTGATCTCCTCAGCAGAAAGATGCTAGGATGTCCCATCAATGACCTCAA
TGTGATCCTTCTTTTCCTCCGAGCTAACATCTCTGAGCTCATCTCTTTTAGCTGGCTGAGTGTCTTATGT
GTGTTGAAGGATACAACCACCCAGAAGCACAATATTGACACAGTAGTTGATTTTATGACTTTATTGGCTG
GCTTAGAACCCTCAAAACCCAAACACCTCACCAACTCGGCATGTGATGAACACCCATAG

Translation (392 aa):
MSLAHTAAEYMLSDALLPDRRGPRLKGLRLELPLDRIVKFVAVGSPLLLMSLAFAQEFSSGSPISCFSPS
NFSIRQAAYVDSSCWDSLLHHKQDGPGQDKMKSLWPHKALPYSLLALALLMYLPVLLWQYAAVPALSSDL
LFIISELDKSYNRSIRLVQHMLKIRQKSSDPYVFWNELEKARKERYFEFPLLERYLACKQRSHSLVATYL
LRNSLLLIFTSATYLYLGHFHLDVFFQEEFSCSIKTGLLSDETHVPNLITCRLTSLSIFQIVSLSSVAIY
TILVPVIIYNLTRLCRWDKRLLSVYEMLPAFDLLSRKMLGCPINDLNVILLFLRANISELISFSWLSVLC
VLKDTTTQKHNIDTVVDFMTLLAGLEPSKPKHLTNSACDEHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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