NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25371.1 (previous version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25371.1 Public Mus musculus 11 Igfbp4 7 37.2 61 CCDS HistoryNCBI Gene:16010Re-query CCDS DB by CCDS ID:25371.1Re-query CCDS DB by GeneID:16010

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Sequence IDs included in CCDS 25371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member EBI ENSMUST00000017637 ENSMUSP00000017637 Accepted not alive Link to Ensembl Transcript Viewer:ENSMUST00000017637Link to Ensembl Protein Viewer:ENSMUSP00000017637Re-query CCDS DB by Nucleotide ID:ENSMUST00000017637Re-query CCDS DB by Protein ID:ENSMUSP00000017637
Original member Current member EBI OTTMUST00000014712 OTTMUSP00000006838 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000014712Link to Vega Protein Viewer:OTTMUSP00000006838Re-query CCDS DB by Nucleotide ID:OTTMUST00000014712Re-query CCDS DB by Protein ID:OTTMUSP00000006838
Original member NCBI NM_010517.3 NP_034647.1 Accepted not alive Link to Nucleotide Sequence:NM_010517.3Link to Protein Sequence:NP_034647.1Re-query CCDS DB by Nucleotide ID:NM_010517Re-query CCDS DB by Protein ID:NP_034647Link to BLAST:NP_034647.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034647.1 254 P47879 254 100% 0 0

Chromosomal Locations for CCDS 25371.1

Assembly MGSCv37 (GCF_000001635.18)

On '+' strand of Chromosome 11 (NC_000077.5)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

Chromosome Start Stop Links
11 98902811 98903159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 98909540 98909685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 98910408 98910542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11
11 98912759 98912893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11Link to Vega Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGCTGCCCTTCGGCCTCGTGGCCGCCCTGCTGCTGGCCGCAGGGCCTCGGCCGAGCCTGGGCGACGAAG
CCATCCACTGCCCCCCTTGCTCCGAGGAGAAGCTGGCGCGCTGCCGCCCCCCCGTGGGTTGCGAGGAGTT
GGTGCGGGAGCCAGGCTGCGGTTGTTGCGCCACTTGCGCCCTGGGCTTGGGGATGCCCTGCGGGGTGTAC
ACCCCACGCTGTGGCTCAGGCATGCGCTGCTACCCTCCCCGGGGGGTGGAGAAGCCCCTGCGTACATTGA
TGCACGGGCAAGGCGTGTGCACGGAGCTGTCGGAAATCGAAGCCATCCAGGAAAGCCTGCAGACCTCTGA
CAAGGATGAGAGCGAACATCCCAACAACAGCTTCAACCCCTGCAGTGCCCATGATCACAGGTGCCTGCAG
AAGCATATGGCCAAAATTAGAGATCGGAGCAAGATGAAGATCGTGGGGACACCTCGGGAGGAACCCCGTC
CTGTGCCCCAGGGTTCCTGCCAGAGCGAGCTGCACCGGGCCCTGGAGCGGCTGGCCGCCTCACAGAGCCG
TACCCACGAAGACCTCTTCATCATCCCCATTCCAAACTGTGACCGCAACGGCAACTTCCACCCCAAACAG
TGTCACCCCGCCCTGGACGGACAGCGTGGCAAGTGCTGGTGTGTGGATCGGAAGACAGGGGTGAAGCTTC
CTGGGGGTTTGGAACCCAAGGGGGAGCTGGACTGCCACCAGCTGGCTGACAGCTTCCAAGAGTGA

Translation (254 aa):
MLPFGLVAALLLAAGPRPSLGDEAIHCPPCSEEKLARCRPPVGCEELVREPGCGCCATCALGLGMPCGVY
TPRCGSGMRCYPPRGVEKPLRTLMHGQGVCTELSEIEAIQESLQTSDKDESEHPNNSFNPCSAHDHRCLQ
KHMAKIRDRSKMKIVGTPREEPRPVPQGSCQSELHRALERLAASQSRTHEDLFIIPIPNCDRNGNFHPKQ
CHPALDGQRGKCWCVDRKTGVKLPGGLEPKGELDCHQLADSFQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH