| RAId | Robust Accurate Identification - a suite of proteomics tools |
| MiCId | Microorganism Classification and Identification – using mass spectrometry data |
| MIDAs | Molecule's Isotopic Distribution Analysis |
| ITM Probe | Information Transduction Module |
| SaddleSum | Robust and accurate data enrichment statistics via distribution function of sum of weights |
| DeCoaD | Determining correlations among diseases using protein interaction networks |
| LogOddsLogo | Sequence logos generation from biological sequence alignments |