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NLM Intramural Research Program |
| Research Group of Ivan Ovcharenko | |
| Research Projects | Publications | Collaborations | Resources | Group Members | Principal Investigator | Visiting us |
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Selected Publications |
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W. Song, R.Sharan and I. Ovcharenko The first enhancer in an enhancer chain safeguards subsequent enhancer-promoter contacts from a distance. Genome Biology, 20(1):197-207 (2019) PDF S. Li, E. Kvon, A. Visel, L. Pennacchio and I. Ovcharenko Stable enhancers are active in development, and fragile enhancers are associated with evolutionary adaptation. Genome Biology, 20(1):140-149 (2019) PDF D. Huang, H. Petrykowska, B. Miller, L. Elnitski and I. Ovcharenko Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression. Genome Research, 29(4):657-667 (2019) PDF Busser BW *, Huang D *, Rogacki KR *, ... Bulyk ML, Ovcharenko I #, Michelson AM # Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network PNAS, 109(50):20768-73 (2013) (* - co-first, # - co-corresponding authors) PDF G. Burzynski *, X. Reed *, L. Taher *, Z.E. Stine, T. Matsui, I. Ovcharenko #, A.S. McCallion # Systematic elucidation and in vivo validation of the sequence basis of hindbrain transcriptional control Genome Research, 22(11):2278-89 (2012) (* - co-first, # - co-corresponding authors) PDF Visel A, Taher L, ... Ovcharenko I, Pennacchio LA, Rubenstein JL (25 authors) A High-Resolution Enhancer Atlas of the Developing Telencephalon Cell, (2013) PDF B.W. Busser *, L. Taher *, Y. Kim, T. Tansey, M.J. Bloom, I. Ovcharenko #, A.M. Michelson # A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis PLoS Genetics, 8(3):e1002531 (2012) PDF (* co-first, # co-corresponding authors) L. Taher, D.M. McGaughey, S. Maragh, I. Aneas, S.L. Bessling, W. Miller, M.A. Nobrega, A.S. McCallion, I. Ovcharenko Genome-wide identification of conserved regulatory function in diverged sequences Genome Research, 21(7), 1139-1149 (2011) PDF U. Hellsten, et al. ... (48 authors) The Genome of the Western Clawed Frog Xenopus tropicalis Science, 328:633-636 (2010) PDF L. Narlikal, N.J. Sakabe, A.A. Blanski, F.E. Arimura, J.M. Westlund, M.A. Nobrega, I. Ovcharenko Genome-wide discovery of human heart enhancers Genome Research, 2010 PDF G.G. Loots and I. Ovcharenko Human Variation in Short Regions Predisposed to Deep Evolutionary Conservation Molecular Biology and Evolution, 2010 PDF L.A. Pennacchio, G.G. Loots, M.A. Nobrega, and I. Ovcharenko Predicting tissue-specific enhancers in the human genome Genome Research, 17(2), 201-11 (2007) PDF G.G. Loots and I. Ovcharenko Dcode.org anthology of comparative genomic tools Nucleic Acids Research, 33, W56-64, (2005) PDF I. Ovcharenko, G.G. Loots, M.A. Nobrega, R.C. Hardison, W. Miller, and L. Stubbs Evolution and functional classification of vertebrate gene deserts Genome Research, 15, 137-145 (2005) PDF M. Nobrega*, I. Ovcharenko*, V. Afzal, E. Rubin Scanning Human Gene Deserts for Long-Range Enhancers Science 302(5644), 413 (2003) PDF D. Boffelli, J. MacAuliffe, D. Ovcharenko, K. Lewis, I. Ovcharenko, L. Pachter, E. Rubin Phylogenetic analysis of primate sequences reveals functional regions of the human genome Science, 299(5611), 1391-4, (2003) PDF Search for other articles from the group on PubMed |
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