678.seasonal.insitu.sample.546; Bioturbating shrim... - BioSample

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678.seasonal.insitu.sample.546; Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments

Identifiers: BioSample: SAMEA4461068; SRA: ERS1360247

Organism: marine sediment metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes

Attributes

alkalinity	Missing: Not Provided
ammonium	Missing: Not Provided
carbon/nitrogen ratio	Missing: Not Provided
depth	10
dissolved carbon dioxide	Missing: Not provided
elevation	0
broad-scale environmental context	marine biome
local-scale environmental context	neritic zone
environmental package	sediment
environmental medium	marine sediment
geographic location	United Kingdom: England,Plymouth harbor
host subject id	546
nitrate	Missing: Not Provided
nitrite	Missing: Not Provided
organic carbon	Missing: Not Provided
organic nitrogen	Missing: Not Provided
pH	Missing: Not Provided
pH method	Missing: Not Provided
phosphate	Missing: Not Provided
salinity	Missing: Not Provided
sample name	qiita_sid_678:678.seasonal.insitu.sample.546
sample type	marine sediment
silicate	Missing: Not provided
temperature	Missing: Not provided
total carbon	Missing: Not Provided
total nitrogen	Missing: Not Provided
ENA first public	2016-10-04
ENA last update	2016-09-20
ENA-CHECKLIST	ERC000011
External Id	SAMEA4461068
INSDC center alias	UCSDMI
INSDC center name	University of California San Diego Microbiome Initiative
INSDC first public	2016-10-04T17:01:55Z
INSDC last update	2016-09-20T23:28:24Z
INSDC status	public
Submitter Id	qiita_sid_678:678.seasonal.insitu.sample.546
anonymized name	546
collection_timestamp	09/29/2009
common name	marine sediment metagenome
core	Missing: Not provided
dna_extracted	TRUE
emp status	EMP
extracted DNA avail now	TRUE
latitude	50.338
longitude	-4.148
pco2	Missing: Not Provided
physical_specimen_location	ANL
physical_specimen_remaining	TRUE
public	TRUE
required_sample_info_status	completed
row	Missing: Not provided
sample_progress	sequenced (16S)
sed_type	Burrow
shrimp	Upogebia
tank	Missing: Not provided

Description: Sediment DNA extracted from seasonal in situ sampling study number 546

BioProject: PRJEB15461
Retrieve all samples from this project

Submission: EBI; 2016-10-05

Accession:: SAMEA4461068
ID:: 5862863

BioProject SRA

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678.seasonal.insitu.sample.546; Bioturbating shrimp alter the structure and dive...
678.seasonal.insitu.sample.546; Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments

biosample
anaerobic ribonucleoside reductase large subunit [Salmonella phage BPS17W1]
anaerobic ribonucleoside reductase large subunit [Salmonella phage BPS17W1]
gi|1631943988|ref|YP_009621649.1|

Protein
tail protein [Enterobacter phage CC31]
tail protein [Enterobacter phage CC31]
gi|311993163|ref|YP_004010029.1|

Protein
PREDICTED: Xenopus tropicalis CAP, adenylate cyclase-associated protein 1 (cap1)...
PREDICTED: Xenopus tropicalis CAP, adenylate cyclase-associated protein 1 (cap1), transcript variant X1, mRNA
gi|1062829692|ref|XM_012956688.2|

Nucleotide
Homo sapiens isolate LRV_149 mitochondrion, complete genome
Homo sapiens isolate LRV_149 mitochondrion, complete genome
gi|1391841065|gb|MG773649.1|

Nucleotide

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678.seasonal.insitu.sample.546; Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments

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