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Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments; 678.OA.mesocosm.408

Identifiers
BioSample: SAMEA4460887; SRA: ERS1360066
Organism
marine sediment metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes
Attributes
alkalinity2640.5
ammoniumMissing: Not Provided
carbon/nitrogen ratioMissing: Not Provided
depth0
dissolved carbon dioxide2606.5
elevation0
broad-scale environmental contextmarine biome
local-scale environmental contextneritic zone
environmental packagesediment
environmental mediummarine sediment
geographic locationUnited Kingdom: England,Plymouth harbor
host subject id408
nitrate32.95
nitriteMissing: Not Provided
organic carbonMissing: Not Provided
organic nitrogenMissing: Not Provided
pH7.69
pH methodMissing: Not Provided
phosphate3.38
salinity35.3
sample nameqiita_sid_678:678.OA.mesocosm.408
sample typemarine sediment
silicate19.48
temperature12.1
total carbonMissing: Not Provided
total nitrogenMissing: Not Provided
ENA first public2016-10-04
ENA last update2016-09-20
ENA-CHECKLISTERC000011
External IdSAMEA4460887
INSDC center aliasUCSDMI
INSDC center nameUniversity of California San Diego Microbiome Initiative
INSDC first public2016-10-04T17:01:55Z
INSDC last update2016-09-20T23:28:19Z
INSDC statuspublic
Submitter Idqiita_sid_678:678.OA.mesocosm.408
anonymized name408
collection_timestamp05/03/2010
common namemarine sediment metagenome
core13
dna_extractedTRUE
emp statusEMP
extracted DNA avail nowTRUE
latitude50.338
longitude-4.148
pco21483.4
physical_specimen_locationANL
physical_specimen_remainingTRUE
publicTRUE
required_sample_info_statuscompleted
row1
sample_progresssequenced (16S)
sed_typeSurface
shrimpUpogebia
tank1.1
Description

Sediment DNA extracted from OA mesocosm study number 408

BioProject
PRJEB15461
Retrieve all samples from this project

Submission
EBI; 2016-10-05
Accession:
SAMEA4460887
ID:
5862682

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