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1.119_H3K27ac

Identifiers
BioSample: SAMEA104143733; SRA: ERS1802751
Organism
Homo sapiens (human)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo
Attributes
diseasepancreatic adenocarcinoma
tissueneoplasm
phenotypebasal
sample nameE-MTAB-5632:1.119_H3K27ac
ENA first public2017-12-29
ENA last update2017-06-28
ENA-CHECKLISTERC000011
External IdSAMEA104143733
INSDC center aliasMayo Clinic
INSDC center nameMayo Clinic
INSDC first public2017-12-29T17:01:49Z
INSDC last update2017-06-28T10:06:41Z
INSDC statuspublic
Submitter IdE-MTAB-5632:1.119_H3K27ac
broker nameArrayExpress
common namehuman
growth conditionxenograft in nude mouse
individual1.119
Description

Protocols: PDAC tissue from surgical samples was fragmented, mixed with 100 μL of Matrigel and implanted with a trocar (10 gauge; Innovative Research of America, Sarasota, FL) in the subcutaneous right upper flank of an anesthetized and disinfected male NMRI-nude mouse. Samples obtained from EUS-FNA were mixed with 100 μL of Matrigel (BD Biosciences, Franklin Lakes, NJ) and injected in the upper right flank of a male nude mice (Swiss Nude Mouse Crl: NU(lco)-Foxn1nu; Charles River Laboratories, Wilmington, MA) for the first implantation. When xenografts reached 1 cm3, these were removed and passed to NMRI-nude mice in the same manner as the surgical samples. All animal experiments were conducted in accordance with institutional guidelines and were approved by the “Plateforme de Stabulation et d’Expérimentation Animale” (PSEA, Scientific Park of Luminy, Marseille). None No treatment was provide DNA was extracted using Blood & Cell culture DNA mini kit (Qiagen) following the manufacturer's instructions.

BioProject
PRJEB21560 ChIP-seq of PDAC tissues grown as patient-derived tumor xenografts.
Retrieve all samples from this project

Submission
EBI; 2017-12-30
Accession:
SAMEA104143733
ID:
8277524

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