Escherichia coli RNase D. Purification and structural characterization of a putative processing nuclease

J Biol Chem. 1981 Jun 10;256(11):5627-32.

Abstract

RNase D, a putative tRNa processing nuclease, has been purified about 1,000-fold from extracts of Escherichia coli to apparent homogeneity, as judged by acrylamide gel electrophoresis under nondenaturing and denaturing conditions and by gel electrofocusing. The purified enzyme is a single chain protein with a molecular weight of 40,000 and an isoelectric point of about 6.2. Spectral analysis indicated that RNase D is devoid of nucleic acid. Amino acid analysis suggested a low content of cysteine, and this was confirmed by the relative insensitivity of the enzyme to sulfhydryl group reagents. RNase D is sensitive to inactivation by elevated temperatures but can be protected by a variety of RNAs, including those which are not substrates for hydrolysis. The relation of RNase D to other known E. coli ribonucleases and to other previously identified processing activities, is discussed.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acids / analysis
  • Endonucleases / isolation & purification*
  • Endonucleases / metabolism
  • Escherichia coli / enzymology*
  • Escherichia coli Proteins*
  • Molecular Weight
  • Ribonuclease III
  • Ribonucleases / isolation & purification*
  • Ribonucleases / metabolism
  • Spectrophotometry, Ultraviolet
  • Sulfhydryl Reagents / pharmacology

Substances

  • Amino Acids
  • Escherichia coli Proteins
  • Sulfhydryl Reagents
  • Endonucleases
  • Ribonucleases
  • Ribonuclease III
  • ribonuclease III, E coli