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Report for CCDS22229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22229.1 Public Mus musculus 8 Wrn 23 108 98 CCDS HistoryNCBI Gene:22427Re-query CCDS DB by CCDS ID:22229.1Re-query CCDS DB by GeneID:22427See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22229.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033990.6 ENSMUSP00000033990.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033990.6Link to Ensembl Protein Viewer:ENSMUSP00000033990.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033990Re-query CCDS DB by Protein ID:ENSMUSP00000033990
Original member Current member EBI ENSMUST00000033991.12 ENSMUSP00000033991.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033991.12Link to Ensembl Protein Viewer:ENSMUSP00000033991.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033991Re-query CCDS DB by Protein ID:ENSMUSP00000033991
Original member Current member NCBI NM_001122822.1 NP_001116294.1 Accepted alive Link to Nucleotide Sequence:NM_001122822.1Link to Protein Sequence:NP_001116294.1Re-query CCDS DB by Nucleotide ID:NM_001122822Re-query CCDS DB by Protein ID:NP_001116294Link to BLAST:NP_001116294.1
Original member Current member NCBI NM_011721.4 NP_035851.3 Accepted alive Link to Nucleotide Sequence:NM_011721.4Link to Protein Sequence:NP_035851.3Re-query CCDS DB by Nucleotide ID:NM_011721Re-query CCDS DB by Protein ID:NP_035851Link to BLAST:NP_035851.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116294.1 1401 O09053 1401 100% 0 0
NP_035851.3 1401 O09053 1401 100% 0 0

Chromosomal Locations for CCDS 22229.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33236337 33236459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33240949 33241154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33248922 33249084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33251705 33251836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33255498 33255612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33256949 33257061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33257198 33257273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33266951 33267024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33267785 33267857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33268723 33268820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33268896 33269066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33280772 33280913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33284618 33284710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33285137 33285238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33288756 33288937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33292558 33292732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33294904 33295091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33305654 33305760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33310711 33310793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33316344 33316412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33317198 33317306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33317546 33317613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33319152 33319227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33320470 33320608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33322288 33322368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33324167 33324593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33329102 33329216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33334176 33334245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33335997 33336146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33342977 33343125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33343547 33343692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33352074 33352186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33353295 33353372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4206 nt):
ATGGAAACCACTTCACTACAGCGGAAATTTCCAGAATGGATGTCTATGCAGAGTCAAAGATGTGCTACAG
AAGAAAAGGCCTGCGTTCAGAAGAGTGTTCTTGAAGATAACCTCCCATTCTTAGAATTCCCTGGATCCAT
TGTTTACAGTTATGAAGCTAGTGATTGCTCCTTCCTGTCTGAAGACATTAGCATGCGTCTGTCTGATGGC
GATGTGGTGGGATTTGACATGGAATGGCCGCCCATATACAAGCCAGGGAAAAGAAGCAGAGTCGCAGTGA
TCCAGTTGTGTGTGTCTGAGAGCAAATGTTACTTGTTTCACATTTCTTCCATGTCAGTTTTCCCCCAGGG
ATTAAAAATGTTACTAGAAAACAAATCAATTAAGAAGGCAGGGGTTGGGATTGAAGGGGACCAGTGGAAA
CTTCTGCGTGATTTTGACGTCAAGTTGGAGAGTTTTGTGGAGCTGACGGATGTTGCCAATGAAAAGTTGA
AGTGCGCAGAGACCTGGAGCCTCAATGGTCTGGTTAAACACGTCTTAGGGAAACAACTTTTGAAAGACAA
GTCCATCCGCTGCAGCAATTGGAGTAATTTCCCCCTCACTGAGGACCAGAAACTGTATGCAGCCACTGAT
GCTTATGCTGGTCTTATCATCTATCAAAAATTAGGAAATTTGGGTGATACTGCGCAAGTGTTTGCTCTAA
ATAAAGCAGAGGAAAACCTACCTCTGGAGATGAAGAAACAGTTGAATTCAATCTCCGAAGAAATGAGGGA
CCTAGCCAATCGTTTTCCTGTCACTTGCAGAAATTTGGAAACTCTCCAGAGGGTTCCTGTAATATTGAAG
AGTATTTCAGAAAATCTCTGTTCATTGAGAAAAGTGATCTGTGGTCCTACAAACACTGAGACTAGACTGA
AGCCGGGCAGTAGTTTTAATTTACTGTCATCAGAGGATTCAGCTGCTGCTGGAGAAAAAGAGAAACAGAT
TGGAAAACATAGTACTTTTGCTAAAATTAAAGAAGAACCATGGGACCCAGAACTTGACAGTTTAGTGAAG
CAAGAGGAGGTTGATGTATTTAGAAATCAAGTGAAGCAAGAAAAAGGTGAATCTGAAAATGAAATAGAAG
ACAATCTGTTGAGAGAAGATATGGAAAGAACTTGTGTGATTCCTAGTATTTCAGAAAATGAACTCCAAGA
TTTGGAACAGCAAGCTAAAGAAGAAAAATATAATGATGTTTCTCACCAACTTTCTGAGCATTTATCTCCC
AATGATGATGAGAATGACTCCTCCTATATAATTGAAAGTGATGAAGATTTGGAAATGGAGATGCTGAAGT
CTTTAGAAAACCTAAATAGTGACGTGGTGGAACCCACTCACTCTACATGGTTGGAAATGGGAACCAATGG
GCGTCTTCCTCCTGAGGAGGAAGATGGACACGGAAATGAAGCCATCAAAGAGGAGCAGGAAGAAGAGGAC
CATTTATTGCCGGAACCCAACGCAAAGCAAATTAATTGCCTCAAGACCTATTTCGGACACAGCAGTTTTA
AACCGGTTCAGTGGAAAGTCATCCATTCTGTATTAGAAGAGAGAAGAGATAATGTTGTTGTCATGGCAAC
TGGATATGGGAAGAGTCTGTGCTTCCAGTATCCGCCTGTTTATACAGGCAAGATTGGCATTGTCATTTCA
CCTCTCATTTCCTTAATGGAAGACCAAGTCCTCCAGCTTGAGCTGTCCAATGTTCCAGCCTGTTTACTTG
GATCTGCACAGTCAAAAAATATTCTAGGAGATGTTAAATTAGGCAAATATAGGGTCATCTACATAACTCC
AGAGTTCTGTTCTGGTAACTTGGATCTACTCCAGCAACTTGACTCTAGTATTGGCATCACTCTCATTGCT
GTGGATGAGGCTCACTGCATTTCAGAGTGGGGCCATGATTTCAGAAGTTCATTCAGGATGCTGGGCTCTC
TTAAAACAGCGCTCCCATTGGTTCCAGTCATTGCACTCTCCGCTACTGCAAGCTCTTCCATCCGGGAAGA
CATTATAAGCTGCTTAAACCTGAAAGACCCTCAGATCACCTGCACTGGATTTGATCGGCCAAATCTGTAC
TTAGAAGTTGGACGGAAAACAGGGAACATCCTTCAGGATCTAAAGCCGTTTCTCGTCCGAAAGGCAAGTT
CTGCCTGGGAATTTGAAGGTCCAACCATCATCTATTGTCCTTCGAGAAAAATGACAGAACAAGTTACTGC
TGAACTTGGGAAACTGAACTTAGCCTGCAGAACATACCACGCTGGCATGAAAATTAGCGAAAGGAAGGAC
GTTCATCATAGGTTCCTGAGAGATGAAATTCAGTGTGTTGTAGCTACTGTAGCTTTTGGAATGGGCATTA
ATAAAGCTGACATTCGCAAAGTTATTCATTATGGTGCGCCTAAGGAAATGGAATCCTATTACCAGGAAAT
TGGTAGAGCTGGCCGGGATGGACTTCAGAGTTCCTGTCACTTGCTCTGGGCTCCAGCAGACTTTAACACA
TCCAGGAATCTCCTTATTGAGATTCACGATGAAAAGTTCCGGTTATATAAATTAAAGATGATGGTAAAGA
TGGAAAAATACCTTCACTCCAGTCAGTGTAGGCGACGAATCATCTTGTCCCATTTTGAGGACAAATGTCT
GCAGAAGGCCTCCTTGGACATTATGGGAACTGAAAAATGCTGTGATAATTGCAGGCCCAGGCTGAATCAT
TGCCTTACTGCTAACAACTCAGAGGACGCATCCCAAGACTTTGGGCCACAAGCATTCCAGCTACTGTCTG
CTGTGGACATCCTGCAGGAGAAATTTGGAATTGGGATTCCGATCTTATTTCTCCGAGGATCTAATTCTCA
GCGTCTTCCTGATAAATATCGGGGTCACAGGCTCTTTGGTGCTGGAAAGGAGCAAGCAGAAAGTTGGTGG
AAGACCCTTTCTCACCATCTCATAGCTGAAGGATTCTTGGTAGAAGTTCCCAAGGAAAACAAATATATAA
AGACATGTTCCCTCACAAAAAAGGGTAGAAAGTGGCTTGGAGAAGCCAGTTCGCAGTCTCCTCCGAGCCT
TCTCCTTCAAGCTAATGAAGAGATGTTTCCAAGGAAAGTTCTGCTACCAAGTTCTAATCCTGTATCTCCA
GAAACGACGCAACATTCCTCTAATCAAAACCCAGCTGGATTAACTACCAAGCAGTCTAATTTGGAGAGAA
CGCATTCTTACAAAGTGCCTGAGAAAGTTTCTTCTGGGACTAACATTCCTAAAAAAAGTGCCGTGATGCC
GTCACCAGGAACATCTTCCAGCCCCTTAGAACCTGCCATCTCAGCCCAAGAGCTGGACGCTCGGACTGGG
CTATATGCCAGGCTGGTGGAAGCAAGGCAGAAACACGCTAATAAGATGGATGTACCTCCAGCTATTTTAG
CAACAAACAAGGTTCTGCTGGACATGGCTAAAATGAGACCGACTACTGTTGAAAACATGAAACAGATCGA
CGGTGTCTCTGAAGGCAAAGCTGCTCTGTTGGCCCCTCTGTTGGAAGTCATCAAACATTTCTGTCAAGTA
ACTAGTGTTCAGACAGACCTCCTTTCCAGTGCCAAACCTCACAAGGAACAGGAGAAAAGTCAGGAGATGG
AAAAGAAAGACTGCTCACTCCCCCAGTCTGTGGCCGTCACATACACTCTATTCCAGGAAAAGAAAATGCC
CTTACACAGCATAGCTGAGAACAGGCTCCTGCCTCTCACAGCAGCCGGCATGCACTTAGCCCAGGCGGTG
AAAGCCGGCTACCCCCTGGATATGGAGCGAGCTGGCCTGACCCCAGAGACTTGGAAGATTATTATGGATG
TCATCCGAAACCCTCCCATCAACTCAGATATGTATAAAGTTAAACTCATCAGAATGTTAGTTCCTGAAAA
CTTAGACACGTACCTCATCCACATGGCGATTGAGATTCTTCAGAGTGGTTCCGACAGCAGAACCCAGCCT
CCTTGTGATTCCAGCAGGAAGAGGCGTTTCCCCAGCTCTGCAGAGAGTTGTGAGAGCTGTAAGGAGAGCA
AAGAGGCGGTCACCGAGACCAAGGCATCATCTTCAGAGTCAAAGAGAAAATTACCCGAGTGGTTTGCCAA
AGGAAATGTGCCCTCAGCTGATACCGGCAGCTCATCATCAATGGCCAAGACCAAAAAGAAAGGTCTCTTT
AGTTAA

Translation (1401 aa):
METTSLQRKFPEWMSMQSQRCATEEKACVQKSVLEDNLPFLEFPGSIVYSYEASDCSFLSEDISMRLSDG
DVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGLKMLLENKSIKKAGVGIEGDQWK
LLRDFDVKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATD
AYAGLIIYQKLGNLGDTAQVFALNKAEENLPLEMKKQLNSISEEMRDLANRFPVTCRNLETLQRVPVILK
SISENLCSLRKVICGPTNTETRLKPGSSFNLLSSEDSAAAGEKEKQIGKHSTFAKIKEEPWDPELDSLVK
QEEVDVFRNQVKQEKGESENEIEDNLLREDMERTCVIPSISENELQDLEQQAKEEKYNDVSHQLSEHLSP
NDDENDSSYIIESDEDLEMEMLKSLENLNSDVVEPTHSTWLEMGTNGRLPPEEEDGHGNEAIKEEQEEED
HLLPEPNAKQINCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS
PLISLMEDQVLQLELSNVPACLLGSAQSKNILGDVKLGKYRVIYITPEFCSGNLDLLQQLDSSIGITLIA
VDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDIISCLNLKDPQITCTGFDRPNLY
LEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKD
VHHRFLRDEIQCVVATVAFGMGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNT
SRNLLIEIHDEKFRLYKLKMMVKMEKYLHSSQCRRRIILSHFEDKCLQKASLDIMGTEKCCDNCRPRLNH
CLTANNSEDASQDFGPQAFQLLSAVDILQEKFGIGIPILFLRGSNSQRLPDKYRGHRLFGAGKEQAESWW
KTLSHHLIAEGFLVEVPKENKYIKTCSLTKKGRKWLGEASSQSPPSLLLQANEEMFPRKVLLPSSNPVSP
ETTQHSSNQNPAGLTTKQSNLERTHSYKVPEKVSSGTNIPKKSAVMPSPGTSSSPLEPAISAQELDARTG
LYARLVEARQKHANKMDVPPAILATNKVLLDMAKMRPTTVENMKQIDGVSEGKAALLAPLLEVIKHFCQV
TSVQTDLLSSAKPHKEQEKSQEMEKKDCSLPQSVAVTYTLFQEKKMPLHSIAENRLLPLTAAGMHLAQAV
KAGYPLDMERAGLTPETWKIIMDVIRNPPINSDMYKVKLIRMLVPENLDTYLIHMAIEILQSGSDSRTQP
PCDSSRKRRFPSSAESCESCKESKEAVTETKASSSESKRKLPEWFAKGNVPSADTGSSSSMAKTKKKGLF
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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