Severe Acute Respiratory Syndrome (SARS)


Query-anchored BLAST alignment of the SARS-CoV genomes. SARS Home

                     +    |     +    |     +    |     +    |     +    |     +     
  1 NC_004718.3  ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
  2 CS079026.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
  3 CQ918598.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
  4 DQ898174.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
  5 AY323977.2   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
  6 CS569493.1   TTATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
  7 CS254197.1   TTATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
  8 AY864805.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
  9 AY864806.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
                     +    |     +    |     +    |     +    |     +    |     +     
 10 CQ918585.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 11 AY485278.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 12 AY394998.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 13 AY350750.1   A--------- ----CCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-47)
 14 CQ918584.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 15 AY282752.2   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 16 AY485277.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 17 AY278491.2   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 18 CS079028.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 19 AY310120.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
                     +    |     +    |     +    |     +    |     +    |     +     
 20 AY345986.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 21 AY345987.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 22 AY394990.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 23 AY394989.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 24 AY345988.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 25 AY394991.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 26 AY394992.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 27 AY394993.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 28 AY654624.1   -TATTAGGTT TTTACCTACC CAGGAAAAGC CAACCGACCT CGATCTCTTG TGGATCTGTT  (1-59)
 29 AY502925.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
                     +    |     +    |     +    |     +    |     +    |     +     
 30 AY502928.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 31 AY291451.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 32 AY357075.1   ---------- ----CCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-46)
 33 CS079029.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 34 AY278554.2   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 35 AY502929.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 36 AY502926.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 37 AY502927.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 38 AY502930.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 39 AY502931.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
                     +    |     +    |     +    |     +    |     +    |     +     
 40 AY714217.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 41 AY362699.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 42 AP006557.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 43 AY278487.3   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 44 AY362698.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 45 AY502923.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 46 AY502932.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 47 AY278741.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 48 CS079027.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 49 AY321118.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
                     +    |     +    |     +    |     +    |     +    |     +     
 50 AP006560.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 51 AP006561.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 52 AP006559.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 53 AY291315.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 54 AY357076.1   ---------- ----CCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-46)
 55 AP006558.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 56 AY278490.3   ----TAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-56)
 57 AY508724.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 58 AY279354.2   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 59 DQ497008.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
                     +    |     +    |     +    |     +    |     +    |     +     
 60 AY502924.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 61 AY278488.2   ---------- ---------C CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-41)
 62 AY559084.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 63 AY559096.1   ATATTAGGT- -------AAC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-52)
 64 AY394850.2   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 65 AY313906.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 66 AY427439.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 67 AY283794.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 68 AY304495.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 69 AY283796.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
                     +    |     +    |     +    |     +    |     +    |     +     
 70 AY559081.1   A--------- ----CGTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-47)
 71 AY559095.1   ---------- TTTCTCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-50)
 72 AY559087.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 73 AY283798.2   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 74 AY394987.1   AT-------- ---------- ---------- ---------- ----CTCTTG TAGATCTGTT  (1-18)
 75 AY394994.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 76 AY283797.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 77 AY559088.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 78 AY559085.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 79 AY559093.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
                     +    |     +    |     +    |     +    |     +    |     +     
 80 AY559092.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 81 AY283795.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 82 DQ640652.1   GGCTTAGGAA AAGACCAACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-67)
                     /        /      / 
                    CC       CCA    TC 
 83 DQ182595.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 84 AY394995.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 85 AY394983.1   ---------- ---------- ---------- ---------- ---------- --GATCTGTT  (1-8)
 86 AY559091.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 87 AY461660.1   ---------- -----CTACC CAGGAAAAGC CAACGAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 88 AY595412.1   A--------- ---------- --GGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-39)
 89 AY559090.1   ---------- --TACCCAGG --GGGAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-46)
                     +    |     +    |     +    |     +    |     +    |     +     
 90 AY390556.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
 91 AY394986.1   A--------- ---------- ---------- ---------- ---------- --GATCTGTT  (1-9)
 92 AY297028.1   ---------- ----CCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-46)
 93 AY278489.2   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 94 AY559086.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
 95 AY559082.1   AAATTTTGTT TC-ATCTATA CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-59)
 96 AY394996.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 97 AY394997.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 98 AY304486.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
 99 AY394978.1   ---------- ---------- ---------- ---------- ---------- ----------
                     +    |     +    |     +    |     +    |     +    |     +     
100 AY394979.1   ---------- ---------- ---------- ---------- ---------- --GATCTGTT  (1-8)
101 AY304488.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
102 AY559089.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
103 AY545917.1   A--------- ---------- ---------- -------CCT CGATCTCTTG TAGATCTGTT  (1-24)
104 AY395003.1   A--------- ---------- ---------- ---------- ---------- --GATCTGTT  (1-9)
105 AY545918.1   ---------- ---------- ---------- ----CAACCT CGATCTCTTG TAGATCTGTT  (1-26)
106 AY545919.1   A--------- ---------- --GGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-39)
107 AY613950.1   ---------- ---------- ---------- ---------- ---------- TAGATCTGTT  (1-10)
108 AY559097.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
109 AY545914.1   ---------- ---------- ---GAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-37)
                     +    |     +    |     +    |     +    |     +    |     +     
110 AY515512.1   ---------- ---------- ---GAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-37)
111 AY613948.1   ---------- ---------- ---------- ---------- ---------- TAGATCTGTT  (1-10)
112 AY613949.1   ---------- ---------- ---------- ---------- ---------- TAGATCTGTT  (1-10)
113 AY545916.1   ---------- ---------- ---------- ----CAACCT CGATCTCTTG TAGATCTGTT  (1-26)
114 AY613947.1   ---------- ---------- ---------- ---------- ---------- TAGATCTGTT  (1-10)
115 AY351680.1   TTATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
116 AY338174.1   A--------- ---------- ---------- ---------- ---------- ----------
117 AY348314.1   A--------- ---------- ---------- ---------- ---------- ----------
118 AY338175.1   A--------- ---------- ---------- ---------- ---------- ----------
119 AY559094.1   ---------- ------TACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-44)
                     +    |     +    |     +    |     +    |     +    |     +     
120 AY463059.1   ---------- ---------- ---------- ---------- ---------- ----------
121 AY572038.1   ---------- ---------- ---------- ---------- ---------- ----------
122 AY568539.1   ---------- ---------- ---------- ---------- ---------- TAGATCTGTT  (1-10)
123 AY394985.1   ---------- ---------- ---------- ---------- ---------- ----------
124 AY559083.1   AAATTTTGTT TCAACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-94)
                              /
                             TCTATA-[11  bases]-CAACCA 
                                  /
                                 CGATCTCTTGTT 
125 AY394982.1   ---------- ---------- ---------- ---------- ---------- --GATCTGTT  (1-8)
126 AY572034.1   A--------- ---------- -------AGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-34)
127 AY772062.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (11-70)
                /
               GATTCCCGGG
128 AY686864.1   ---------- ---------- ---------- ---------- -GATCTCTTG TAGATCTGTT  (1-19)
129 AY572035.1   ---------- ---------- ---------- ---------- --------TG TAGATCTGTT  (1-12)
                     +    |     +    |     +    |     +    |     +    |     +     
130 AY545915.1   A--------- ---------- ---------- ---CCAACCT CGATCTCTTG TAGATCTGTT  (1-28)
131 AY686863.1   A--------- ---------- ---------- ---------- ---------- --GATCTGTT  (1-9)
132 AY395000.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
133 AY395001.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
134 AY394999.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
135 AY395002.1   ---------- -----CTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-45)
136 AB257344.1   ---------- ---------- ---------- ---------- -GATCTCTTG TAGATCTGTT  (1-19)
137 AY394981.1   A--------- ---------- ---------- ---------- ---------- --GATCTGTT  (1-9)
138 AY395004.1   ---------- ---------- ---------- ---------- -------TTG TAGATCTGTT  (1-13)
139 AY394988.1   AA-------- ---------- ---------- ---------- ---------- ----------  (1-2)
                     +    |     +    |     +    |     +    |     +    |     +     
140 AY394977.1   A--------- ---------- ---------- ---------- ---------- --GATCTGTT  (1-9)
141 AY394984.1   ---------- ---------- ---------- ---------- -------TTG TAGATCTGTT  (1-13)
142 AY394980.1   ---------- ---------- ---------- ---------- ------CTTG TAGATCTGTT  (1-14)
143 CS480537.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
144 CS460762.1   ATATTAGGTT TTTACCTACC CAGGAAAAGC CAACCAACCT CGATCTCTTG TAGATCTGTT  (1-60)
                     +    |     +    |     +    |     +    |     +    |     +     
                     +    |     +    |     +    |     +    |     +    |     +     
  1 NC_004718.3  CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
  2 CS079026.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
  3 CQ918598.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
  4 DQ898174.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
  5 AY323977.2   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
  6 CS569493.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
  7 CS254197.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
  8 AY864805.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
  9 AY864806.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
                     +    |     +    |     +    |     +    |     +    |     +     
 10 CQ918585.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 11 AY485278.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
 12 AY394998.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 13 AY350750.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (48-107)
 14 CQ918584.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 15 AY282752.2   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 16 AY485277.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
 17 AY278491.2   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
 18 CS079028.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
 19 AY310120.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
                     +    |     +    |     +    |     +    |     +    |     +     
 20 AY345986.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 21 AY345987.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 22 AY394990.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 23 AY394989.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 24 AY345988.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 25 AY394991.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 26 AY394992.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 27 AY394993.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 28 AY654624.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (60-119)
 29 AY502925.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
                     +    |     +    |     +    |     +    |     +    |     +     
 30 AY502928.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
 31 AY291451.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
 32 AY357075.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (47-106)
 33 CS079029.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 34 AY278554.2   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (46-105)
 35 AY502929.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA GTGCACCTAC  (61-120)
 36 AY502926.1   CTCTAAACGA ACTTTAAAAT CTGTGTAGCT GTCGCTCGGC TGCATGCCTA