Index

.cgi

2.3.1

.REAL

2.3.1

accession

2.2.1

AddHandler

2.3.2

ALIGNMENT VIEW

no title

ALIGNMENTS

no title

Apache

no title

ASN.1

3.3

BLAST TYPE

no title

BLAST URLAPI

4

BLOSUM45

4.13

BLOSUM62

4.13

BLOSUM80

4.13

client server

2.2.1

COLOR SCHEMA

no title

configuration

no title

conserved domains

3.5

cygwin

1

data

2.2.2

Database

no title | no title

DESCRIPTIONS

no title

dropoff

3.4

E THRESH

no title

ENDPOINTS

no title

Entrez

2.2.1

Entrez limit

2.2.1

ENTREZ QUERY

no title

expect

3.4 | no title

ffrom

3.4

FILTER

no title

filter

3.4

formatrpsdb

3.5

from

3.4

GAP EXTEND

no title

GAP OPEN

no title

GENETIC CODE

no title

gext

3.4

gi

2.2.1

gopen

3.4

graphic user interface

1

HTTPD

2.5

httpd.conf

no title | no title

INPUT TYPE

no title

MAT PARAM

no title

match

3.4

Matrix

3.4

MATRIX

no title

MEGABLAST

no title

msmatch

3.4

NCBI GI

no title

NUM OF BITS

no title

one

3.4

OOF

3.6

OOF ALIGN

no title

OTHER ADVANCED

no title

OVERVIEW

no title

PAM30

4.13

PAM70

4.13

PERC IDENT

no title

Perl script

5 | no title

PHI BLAST

no title

PHI PATTERN

no title

position specific score matrix

3.1

PRGRAM

no title

program

3.4

PSSM

3.1

QUERY

no title

root directory

2.2.1

RPS BLAST

3.5

RPSBLAST

no title

SEQFILE

no title

seqfile1

3.4

seqfile2

3.4

SMITH WATERMAN

no title

Steps

no title

TAX BLAST

no title

Taxonomy report

2.2.1

TEMPLATE LENGTH

no title

TEMPLATE TYPE

no title

THRESHOLD 2

no title

TmpGifs

2.2.2

to

3.4

toolkit

1

tto

3.4

TWEAK PARAMETERS

no title

two

3.4

TWO HITS

no title

UNGAPPED ALIGNMENT

no title

URLAPI

no title

word

3.4

wwwblast

wwwblast

X DROPOFF

no title

X window

1

XML

3.3

XML OUTPUT

no title