4.13 MATRIX

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4.13 MATRIX

Option MATRIX

Function Specifies the protein score matrix to use

Input format string

Default BLOSUM62

Example To set matrix to PAM30, use '&MATRIX=PAM30&'

*Function*	Specifies the protein score matrix to use
*Input format*	string
*Default*	BLOSUM62
*Example*	To set matrix to PAM30, use '*&MATRIX=PAM30&*'

Note: For protein and translated searches. Equivalent in blastall: '-M'. Accepted values: PAM30, PAM70, BLOSUM45, BLOSUM62, and BLOSUM80. See: http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/new/node89.html.

Tao Tao 2006-12-04