Option MAT_PARAM
| Function | Sets three matrix related parameters at the same time |
|---|---|
| Input format | Value for this tag should be in format 'mat_name+d1+d2' |
| Default | BLOSUM62+11+1 |
| Example | To use PAM70 and its defaults gapping parameters, set this to '&MAT_PARAM=PAM70+11+2&' |
Note: mat_name is valid matrix name, d1 is integer for gap open cost (-G), and d2 is the gap extension cost (-E). For details see: http://www.ncbi.nlm.nih.gov/staff/tao/URLAPI/new/URLAPI_node91.html.