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3.6 Out of Frame BLASTX

The blastx program finds alignments between the three-frame translations of a nucleotide sequence and protein sequences from an input database. In the OOF version of this program, the query sequence frames can be shifted within one alignment. The algorithm and low-level alignment functions were written by Zheng Zhang. They were incorporated into regular BLAST API by Sergei Shavirin. XML and tabular output are not yet implemented for the OOF alignments.



Tao Tao 2006-12-04