The 'Get' command retrieves formatted results from splitd. Parameters accepted are listed in the table below.
| Table 4.2 Parameters for Command Get | ||
| ALIGNMENTS (5.1.1) ** | ALIGNMENT_VIEW (5.1.2) | DESCRIPTIONS (5.1.11) ** |
| DATABASE_SORT (5.1.8) | DISPLAY_SORT (5.1.12) | EXPECT_HIGH (5.1.15) |
| EXPECT_LOW (5.1.16) | FORMAT_OBJECT (5.1.20) | FORMAT_ENTREZ_QUERY (5.1.19) |
| FORMAT_TYPE (5.1.21) | HSP_SORT (5.1.26) | I_THRESH (5.1.27) * |
| MASK_CHAR (5.1.29) | MASK_COLOR (5.1.30) | NCBI_GI (5.1.35) |
| NOHEADER (5.1.38) | NUM_OVERVIEW (5.1.39) | RID (5.1.51) |
| SHOW_CDS_FEATURE (5.1.55) | SHOW_LINKOUT (5.1.56) | SHOW_OVERVIEW (5.1.57) |
| * Smaller value in 'Get'
step dominates.
* * Accepted by 'Put' or 'Get'. Smaller value in 'Put' dominates, unless HITLIST_SIZE was also used. |
||
The following example retrieves the result for RID 6ZXJ7X1P014. We will get the alignment in Pairwise format as HTML document with up to 200 alignments and descriptions. We also enable the Linkout display, which displays links to other NCBI database entries with additional information through colored icons.
$ lynx -source "\
http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Get&RID=6ZXJ7X1P014\
&FORMAT_OBJECT=Alignment&ALIGNMENT_TYPE=Pairwise&FORMAT_TYPE=HTML\
&DESCRIPTIONS=200&ALIGNMENTS=200&SHOW_LINKOUT=yes"