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5.1.62 WORD_SIZE

Parameter: WORD_SIZE

Description Specifies the size of word to use
Value integer
Default 3, 11, 28
CMD Put
Example '...&WORD_SIZE=2&...' sets this to 2 for protein BLAST.
.

Note: For protein searches use 2 or 3, default is 3. For nucleotide searches use integers greater or equal to 7, default is 11. For nucleotide searches with 'MEGABLAST=on', use 8 or greater, default is 28. Discomegablast uses 11 or 12. Same as in wwwblast. Commandline BLAST equivalent: '-W'.



Tao Tao 2007-08-03