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5.1.32 MATRIX_NAME

Parameter: MATRIX_NAME

Description Determines the protein score matrix to use
Value PAM30, PAM70, BLOSUM45, BLOSUM42, BLOSUM80
Default BLOSUM62
CMD Put
Example '...&MATRIX_NAME=PAM30&...' will set this to PAM30.

Note: Using input value other than the default also requires change in the 'GAPCOSTS' parameter. The allowed list of input values to 'GAPCOSTS' for supported matrces is given in 6.13.2. Use parameter 'MATRIX_PARAM' in wwwblast, which combines these two parameters together. Equivalent in standalone command BLAST '-M'.



Tao Tao 2007-08-03