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Contents
- ALIGNMENT VIEW
- 5.1.2
- ALIGNMENTS
- no title
| 5.1.1
| 6.1
- BLAST
- 2
- BLAST PROGRAM
- 5.1.3
- CDD SEARCH
- 5.1.4
| 5.1.4
| 6.2
- CMD
- 4
| 5.1.5
- COIL
- 6.4
- command
- 4
- commandline blast
- 2
- commands
- 5
- Compatibility
- no title
- COMPOSITION BASED STATISTICS
- 5.1.6
- CPU usage limit
- 8.2.2
- DATABASE
- 5.1.7
- DATABASE PREFIX
- 5.1.9
- DATABASE SORT
- 5.1.8
- DB GENETIC CODE
- 5.1.10
- DESCRIPTIONS
- 5.1.11
- discontiguous MEGABLAST
- 6.12
- DISPLAY SORT
- 5.1.12
- Entrez
- no title
- ENTREZ QUERY
- 5.1.13
| 6.3
- Error Checkings
- no title
- Error: 414
- 8.2.1
- Error: 500
- 8.2.1
| 8.2.2
- Error: 502
- 8.2.1
| 8.2.2
- Error: 803
- 8.2.1
| 8.2.2
- Errors
- no title
- Escape
- no title
- EXPECT
- 5.1.14
| 6.1
- EXPECT HIGH
- 5.1.15
- EXPECT LOW
- 5.1.16
- FILTER
- 5.1.18
| no title
- FIRST QUERY NUM
- 5.1.17
- FORMAT ENTREZ QUERY
- 5.1.19
| 6.3
- FORMAT OBJECT
- 5.1.20
- FORMAT TYPE
- 5.1.21
- GAPCOSTS
- 5.1.22
| no title
| no title
| no title
- GENETIC CODE
- 5.1.23
- Get
- 3
| no title
| 4.2
- GET SEQUENCE
- 5.1.24
- greedy algorithm
- 6.5
- help documents
- 9
- HITLIST SIZE
- 5.1.25
| 6.1
- HSP SORT
- 5.1.26
- human repeat filter
- 5
- I THRESHOLD
- 5.1.27
- Info
- 4.3
- LCASE MASK
- 5.1.28
- Linkout
- no title
- low complexity filter
- 5
- lynx
- 3.1
| 3.2
- MASK CHAR
- 5.1.29
- MASK COLOR
- 5.1.30
- MATCH SCORES
- 5.1.31
- Matrices
- no title
| no title
| no title
- MATRIX NAME
- 5.1.32
- MAX NUM SEQ
- 5.1.33
| 6.1
- MEGABLAST
- 5.1.34
- MEGABLAST Features
- no title
- msg error
- 8.2.1
- NCBI GI
- 5.1.35
- NEWWIN
- 5.1.36
| 5.1.37
- NOHEADER
- 5.1.38
- NUM OVERVIEW
- 5.1.39
- OTHER ADVACED
- 5.1.40
- OTHER ADVANCED
- no title
- PAGE TYPE
- 5.1.41
- parameters
- 5
- Pattern Syntax
- no title
- PERC IDENT
- 5.1.42
- Perl
- 8.3
- Perl module
- 8.3
- PHI PATTERN
- 5.1.43
- PHI-BLAST
- no title
- PROGRAM
- 5.1.44
- Program Selection Guide
- 9
- PSSM
- 5.1.45
| no title
- Put
- 3
| no title
| 4.1
- QBlastInfoBegin
- 3.1
| 3.2
| 3.2
| 4.3
- QUERY
- 5.1.46
- QUERY BELIEVE DEFLINE
- 5.1.47
- QUERY FROM
- 5.1.48
- QUERY TO
- 5.1.49
- READY
- 3.2
- REPEAT
- 5.1.50
- Repeats
- 6.4
- Request ID
- 3
- RID
- 3
| 5.1.51
- RTOE
- 3.1
- RUN PSIBLAST
- 5.1.52
- Sample Script
- no title
- SEARCHSP EFF
- 5.1.53
- SEG
- 6.4
- sh
- 3.1
- Short Queries
- no title
- SHORT QUERY ADJUST
- 6.15
- SHORT-QUERY-ADJUST
- 5.1.54
- SHOW CDS FEATURES
- 5.1.55
| 6.11
- SHOW LINKOUT
- 5.1.56
| 6.11
- SHOW OVERVIEW
- 5.1.57
| 6.8
- SIGXCPU
- 8.2.2
- splitd
- 2
- standalone BLAST
- 2
- Status
- 3.2
| 3.2
| 8.2.2
- Strategy
- no title
- Summary
- no title
- technical assistance
- 9
- TEMPLATE LENGTH
- 5.1.58
| 6.12
- TEMPLATE TYPE
- 5.1.59
| 6.12
- THRESHOLD
- 5.1.60
- Too many HSPs
- 8.2.2
- TWO HITS
- 5.1.61
- Unsafe Characters
- no title
- URI::Escape
- 8.3
- URLAPI
- 2
- User Requirements
- no title
- WAITING
- 3.2
- WORD SIZE
- 5.1.62
- WWW BLAST TYPE
- 5.1.63
- wwwblast
- 2
- X-dropoff
- 6.5
Tao Tao
2007-08-03