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6.5.2 Tabular formats

There are two tabular formats generated by -m 8 and 9, respectively. Both list only tab delimited key alignment statistics without giving the actual alignments. The differences between the two tabular formats are that 1) -m 8 only sorts the HSPs from individual database sequences, and 2) there is no header separate HSPs from different database sequences. So if there are no hits found for a given query, -m 8 will skip it, while -m 9 will print out the header before going on to the next query.

The order of fields for BLAST result in tabular format is: query id, database sequence (subject) id, percent identity, alignment length, number of mismatches, number of gap openings, query start, query end, subject start, subject end, Expect value, HSP bit score.



Tao Tao 2006-12-29