3.2.44 Parameter -s

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3.2.44 Parameter -s

Parameter -s

Function Computes locally optimal Smith-Waterman alignments

Default F

Input format [T/F]

Example To compute locally optimal Smith-Waterman alignments, use: -s T

Parameter	-s
Function	Computes locally optimal Smith-Waterman alignments
Default	F
Input format	[T/F]
Example	To compute locally optimal Smith-Waterman alignments, use: -s T

Note:

This option is only available for gapped tblastn.

Tao Tao 2006-12-29