3.2.40 Parameter -t

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3.2.40 Parameter -t

Parameter -t

Function Specifies the length of the largest intron allowed in tblastn for linking HSPs

Default 0

Input format Integer

Example To allow link of HSPs 10000 bases apart, use: -t 10000

Parameter	-t
Function	Specifies the length of the largest intron allowed in tblastn for linking HSPs
Default	0
Input format	Integer
Example	To allow link of HSPs 10000 bases apart, use: -t 10000

Note:

BLAST will use the value specified to link hits. Zero disables linking.

Tao Tao 2006-12-29