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3.2.40 Parameter -t
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3.2 Individual command line
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3.2.38 Parameter -A
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3.2.39 Parameter -w
Parameter
-w
Function
Specifies frame shift (Out Of Frame, OOF) penalty
Default
0
Input format
Integer
Example
To activate OOF penalty with desired value (5), use:
-w 5
Note:
Non-zero setting invokes OOF (Out Of Frame) algorithm for blastx.
Tao Tao 2006-12-29
