3.2.37 Parameter -L

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3.2.37 Parameter -L

Parameter -L

Function Specifies the subsequence of the query to use

Default Optional

Input format String

Example To search with subsequence between 100-400, use: -L "100,400"

Parameter	-L
Function	Specifies the subsequence of the query to use
Default	Optional
Input format	String
Example	To search with subsequence between 100-400, use: -L "100,400"

Note:

Convention is -L "start,end", where the start and end are the coordinates for the subsequence. Start position is marked as 1. Coordinates are applied to all queries. If end is larger than the sequence length, sequence length will be used. If start is larger than the sequence length, blast will report error.

Tao Tao 2006-12-29