3.2.35 Parameter -R

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3.2.35 Parameter -R

Parameter -R

Function Uses a PSI-TBLASTN checkpoint file as the scoring matrix

Default Optional

Input format [File in]

Example To read in a checkpoint file query.chk, use: -R query.chk

Parameter	-R
Function	Uses a PSI-TBLASTN checkpoint file as the scoring matrix
Default	Optional
Input format	[File in]
Example	To read in a checkpoint file query.chk, use: -R query.chk

Note:

This parameter takes the checkpoint file generated by the -C parameter of blastpgp and uses it as matrix in the tblastn search. The same query must be used.

Tao Tao 2006-12-29