Tutorials on

• Old BLAST Pages' New Equivalents
• BLAST Program Selection Guide
• Searching with Primers in BLAST
• Resolve minor BLAST Page Problems by Clearing Cache from the Browsers
• ORF_Finder (video)
• BLink Tutorial: protein similarity

Documents on Web BLAST
• new blast output format explained
• blastn search result explained
• blastn search stat section explained
• BLAST URLAPI
• Web rpsblast options

Documents on standalone BLAST package

• How to set up BLAST on Windows PC
• How to set up BLAST on Unix, Linux, MacOSX
• Blast FTP Site
• Blast FTP databases
• Parameter and usage of blastall
• Parameter and usage of formatdb and fastacmd
• Parameter and usage of megablast
• Parameter and usage of blastpgp
• Parameter and usage of rpsblast
• Parameter and usage of formatrpsdb
• Direct Comparison of Two Sequences Using bl2seq
• Batch search NCBI db using netblast (blastcl3)
• Pattern/motif search with seedtop
• Clustering sequences using blastclust
• Setup of wwwblast

Other materials

Other web tools

• One Letter Codes
• Subseq Retriever
• Nucleotide Seq Reverser
• MW_calculator
• SeqID Parser/Seq Retriever