Illumina whole genome shotgun sequencing of metagenomic paired-end li... - SRA

SRX346405: Illumina whole genome shotgun sequencing of metagenomic paired-end library 'Pond-222403' containing sample 'W2.33.ST'
2 ILLUMINA (Illumina HiSeq 2000) runs: 6.2M spots, 1.3G bases, 797Mb downloads

UUID: b708f82b-9839-47dc-963e-01c483373655

Design: Illumina sequencing of gut metagenome via random selection

Submitted by: Broad Institute (BI)

Study: Fiji COMP

PRJNA217052 • SRP029441 • All experiments • All runs

show Abstracthide Abstract

This study will characterize the role of human-associated bacteria in health and disease from a sample set collected in Fiji. The study seeks to find out how people share benign bacteria that live in guts, mouths and skin with each other and with their domestic animals and surroundings. There are several diseases that are spread by bacteria between humans and between humans and their livestock. Through this study, the researchers want to determine how much bacterial sharing goes on between humans and their domestic animals.

Sample: Generic sample from gut metagenome

SAMN02334059 • SRS476164 • All experiments • All runs

Organism: gut metagenome

Library:

Name: Pond-222403

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithoutReference

data_type: WGS

gssr_id: 290550.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3VWNR

material_type: DNA:DNA Somatic

product_order: PDO-310

product_part_number: P-WG-0004

project: G30512

research_project: RP-197

root_sample_id: SM-3NFPG

sample_id: SM-3VWNR

work_request: 35191

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-03 15:30:42.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 6.2M spots, 1.3G bases, 797Mb

Run	# of Spots	# of Bases	Size	Published
SRR2228493	3,095,640	625.3M	397.3Mb	2015-09-01
SRR2228767	3,109,677	628.2M	399.7Mb	2015-09-01

ID:: 491539

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