Display Settings:

Format

Send to:

Choose Destination

SRX016729: Whole Genome Sequencing of Clostridium asparagiforme DSM 15981
1 LS454 (454 GS FLX) run: 369,540 spots, 101.6M bases, 197.7Mb downloads

Accession: SRX016729
Experiment design: LS454 sequencing of HMP Reference Genome for Clostridium sp. DSM 15981 CAAM-454_PE paired end RANDOM library
Submitted by: WUGSC
Study summary: SRP001923 • Reference genome for the Human Microbiome Project • PRJNA29263 • All experiments  • Run Selector (more...)(less...)
Abstract: <P><B><I> Clostridium asparagiforme </I> DSM 15981</B>. <I> Clostridium asparagiforme </I> DSM 15981 was isolated from human feces. This is the type strain and is part of a comprehensive, sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine, the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome.
Center Project: Clostridium asparagiforme DSM 15981
Sample: SAMN00008804 • MIGS Cultured Bacterial/Archaeal sample from Clostridium asparagiforme DSM 15981 (more...)(less...)
Attributes:
Level 2: High-Quality Draft14.3x;610
not determined
6224000
not determined
Homo sapiens
Reference Genome
not determined
terrestrial biome [ENVO:00000446]
not determined
not determined
missing
human-associated habitat [ENVO:00009003]
9606
Clostridium asparagiforme DSM 15981
Newbler v. 2.0.0-PostRelease-10/28/2008
not determined
DSM 15981, CCUG 48471
biological product [ENVO:02000043]
not determined
gastrointestinal_tract
not determined
454-GS-FLX
http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
DSM 15981
missing
DSM:15981
missing
MIGS.ba
Library: 2718106227  (more...)(less...)
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED, Nominal length: 3500, Nominal Std Dev: 500
Platform: LS454  (more...)(less...)
Instrument model: 454 GS FLX
Spot descriptor:
           forward         forward

Total: 1 run, 369,540 spots, 101.6M bases, 197.7Mb 
#Run# of Spots# of BasesSizePublished
1. SRR036365369,540101.6M197.7Mb2010-02-24

ID:
17834

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Write to the Help Desk