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SRX000238: 454 sequencing of coral metagenome fragment library
1 LS454 (454 GS 20) run: 40,456 spots, 4.5M bases, 10.5Mb downloads

Accession: SRX000238
Experiment design: none provided
Submitted by: SDSU
Study summary: SRP000166 • Viral community from coral • PRJNA28417 • All experiments  • Run Selector (more...)(less...)
Abstract: Viruses were collected from whole Porites compressa tissue extracts (originally collected at 21.434025, -157.787822 between February 23-25, 2006) taken from an aquarium control experiment that consisted of 5 liters of ambient seawater that was changed every 24 hours. Metagenome consisted of 36 amplified coral viral DNA samples that were collected at 1 (n=9), 4 (n=9), 16 (n=9), and 64 (n=9) hours during the experiment. DNA samples were pooled in equal amounts for sequencing at 454 Life Sciences. <p> 454 sequence data is available from the Short Read Archive (SRA): <a href="ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/SRA000447 ">SRA000447</a>. <p> Metagenomic SEED ID: 4440374.3 <p> Nature paper ID: 58 <p> The WGS project can be found using the Project data link.
Center Project: Viral Metagenome from Porites compressa ConPorCompHawVir0206
Sample: SAMN00000161 • Generic sample from coral metagenome (more...)(less...)
02/23/2006 - 02/25/2006
21.434025, -157.787822
Library: ConPorCompHawVir0206  (more...)(less...)
Strategy: OTHER
Source: OTHER
Selection: RANDOM
Layout: SINGLE
Platform: LS454  (more...)(less...)
Instrument model: 454 GS 20
Spot descriptor:

Total: 1 run, 40,456 spots, 4.5M bases, 10.5Mb 
#Run# of Spots# of BasesSize
1. SRR00107840,4564.5M10.5Mb


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