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    Halomonas sp. GFAJ-1 ATCC BAA-2256 library

    Accession: SRX109792
    Experiment design: Halomonas sp. GFAJ-1 is an extremophile isolated from an alkaline, hypersaline lake that shows resistance to high concentrations of arsenic. The draft genome of GFAJ-1 may illuminate claims that this strain is remarkable in its incorporation of arsenic .
    Submission: SRA048271 by Argonne National Laboratory
    Study summary: Halomonas sp. GFAJ-1 ATCC BAA-2256 library (SRP009491) • Study • All experiments (more...)(less...)
    Abstract: Halomonas sp. GFAJ-1 is an extremophile isolated from an alkaline, hypersaline lake that shows resistance to high concentrations of arsenic.
    Center: Argonne National Laboratory
    Center Project: Halomonas GFAJ 150bp library
    Sample: Halomonas sp. GFAJ-1 is an extremophile isolated from an alkaline, hypersaline lake with that shows resistance to high concentrations of arsenic. (SRS281273) (more...)(less...)
    Attributes:
    ATCC BAA-2256
    External link:
    Library: GFAJ-1  (more...)(less...)
    Strategy: WGS
    Source: GENOMIC
    Selection: RANDOM
    Layout: PAIRED, Orientation: , Nominal length: 150, Nominal Std Dev: 30
    Construction protocol: A large culture (400 ml) in late log phase growth was harvested by centrifugation, washed in 0.9 g/l NaCl solution, and suspended for cell wall digestion by EDTA and lysozyme, followed first by proteinase K digestion for 60 min at 65 *C, then RNAse digestion (at 37 deg C overnight) to eliminate RNA. The suspension was subjected to phenol extraction to remove proteins and repeated phenol-chloroform extractions before ethanol precipitation. The nucleic acid fraction was centrifuged, and the pellet dissolved in TE buffer, pH 8. The protocol and conditions followed those of Sambrook J., and D.W. Russell. 2001. Molecular Cloning: a laboratory manual. 3rd ed..
    Platform: Illumina  (more...)(less...)
    Instrument model: Illumina HiSeq 2000
    Spot descriptor:
    forward102  reverse

    Total: 1 run, 65.1M spots, 13.2G bases
    Download reads for this experiment in sra or sra-lite formats 
    SRA data are provisioned in full "sra" format and "sra-lite" format objects. With "sra-lite" it is possible to extract sequence and qualities (for example, fastq format). Intensity scores are provided only in the full "sra" format. Extraction of SFF format should begin with full "sra" formatted SRA objects so that the flowgram can be included in the SFF file.
    To get "fastq" format see Converting SRA format data into FASTQ in the SRA Handbook.

    #Run# of Spots# of Bases
    1. SRR38595265,107,41213.2G

    ID:
    127069

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