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ERX1042617: Illumina HiSeq 2000 paired end sequencing; Transcriptome analysis of 103 RILs of a B73 x H99 RIL population
1 ILLUMINA (Illumina HiSeq 2000) run: 20.4M spots, 4.1G bases, 2.8Gb downloads

Design: Transcriptome analysis of 103 RILs of a B73 x H99 RIL population
Submitted by: VIB DEPARTMENT OF PLANT SYSTEMS BIOLOGY, GHENT UNI
Study: Transcriptome analysis of 103 RILs of a B73 x H99 RIL population
show Abstracthide Abstract
The RIL population used in this study is derived from a cross between parental lines B73 and H99, followed by 12 generations of self-pollination. In total 142 RILs were generated and 223 markers were used for mapping these RILs (Marino et al. (2009) Mol Genet Genomics, 281:163-179). The transcriptome of a randomly chosen subset of 103 RILs was analyzed in this study using RNA-seq.
Sample: B73_H99_RIL80
SAMEA3487018 • ERS794167 • All experiments • All runs
Organism: Zea mays
Library:
Name: B73_H99_RIL80
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: We sampled the first 0.5cm of the most basal part of leaf 4 3 days after appearance, always at the same time of the day to minimize diurnal effects All traits were measured in a series of experiments in a single growth chamber. RILs were grown in a randomized design each time along with their respective parents. Experiments were conducted under controlled growth chamber conditions (24°C, 55% relative humidity, light intensity of 170mmol m-2 s-1 photosynthetic active radiation, in a 16h/8h day-night cycle). Total RNA was extracted using Trizol (Invitrogen) according to manufacturer’s instructions, followed by DNA digestion using the RNase-free DNase I kit (Qiagen). Library preparation was done using the TruSeq RNA Sample Preparation Kit v2 (Illumina). In brief, polyA containing mRNA molecules are reverse transcribed, double-stranded cDNA is generated and adapters are ligated.
Spot descriptor:
forward102  reverse

Experiment attributes:
Experimental Factor: RIL80: strain
Runs: 1 run, 20.4M spots, 4.1G bases, 2.8Gb
Run# of Spots# of BasesSizePublished
ERR96565020,440,8544.1G2.8Gb2015-07-25

ID:
1632057

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