marine sediment SSU rRNA (16S) gene survey - SRA

SRX753372: marine sediment SSU rRNA (16S) gene survey
1 ILLUMINA (Illumina MiSeq) run: 29,383 spots, 4.4M bases, 2.2Mb downloads

Design: We collected deep subseafloor crustal fluids from borehole observatories located on the Juan de Fuca Ridge flank. Fluids were filtered to collect the microbial size-fraction and preserved at -80 C until transport to the laboratory. DNA was extracted from the samples and the SSU rRNA genes were amplified from the environmental genomic DNA using a barcoded primer (515F/806R) approach to perform sequencing of multiplexed samples (Caporaso et al., 2011; PNAS).

Submitted by: University of Hawaii

Study: Aging mid-ocean ridge flanks support a distinct microbial ecosystem

PRJNA266365 • SRP049601 • All experiments • All runs

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Microbial communities inhabiting fluids inside the basaltic crust aquifer are distinct from overlying sediment and deep seawater microbial communities

Sample: Hole U1363F marine sediment

SAMN03166088 • SRS738733 • All experiments • All runs

Organism: marine sediment metagenome

Library:

Name: SD3

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Spot descriptor:

1 forward

Pipeline: show...hide...

Program	Version
QIIME	1.7

Runs: 1 run, 29,383 spots, 4.4M bases, 2.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1646872	29,383	4.4M	2.2Mb	2015-01-03

ID:: 1090031

SRA

Sequence Read Archive

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