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SRX027106: Artificial bacterial community (control library 1)
1 ILLUMINA (Illumina Genome Analyzer II) run: 716,366 spots, 179.1M bases, 93.8Mb downloads

Design: PCR was carried out using genomic DNA as template with modified 16S rRNA primers (which, in addition to targeting the bacterial 16S rRNA gene, also contain regions specific to Illumina paired-end sequencing primers and contain regions necessary to bind to the Illumina flow cell). Following this PCR products of the correct size were recovered using the QIAquick gel extraction kit (Qiagen. USA).
Submitted by: University of Waterloo
Study: **Generation of multi-million 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads
show Abstracthide Abstract
In order to increase the depth of sampling for diverse bacterial communities, we developed a new method for sequencing and assembling millions of paired-end reads from the 16S rRNA gene (spanning the V3 region; ~200 nucleotides) using Illumina sequencing platforms. Sequence libraries were prepared in duplicate for both a defined mixture of DNA from known bacterial cultured isolates (>1 million sequences combined) and from an arctic tundra soil sample (>6 million sequences following initial filtering).
Sample: Bacterial soil community
SAMN00113512 • SRS115045 • All experiments • All runs
Organism: soil metagenome
Library:
Name: C1
Instrument: Illumina Genome Analyzer II
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Spot descriptor:
forward126  reverse

Runs: 1 run, 716,366 spots, 179.1M bases, 93.8Mb
Run# of Spots# of BasesSizePublished
SRR069027716,366179.1M93.8Mb2010-10-20

ID:
32967

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