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CGAP
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NCI Metathesaurus (ICD-0-3)

Chromosome Databases

Cancer Chromosomes

Mitelman Database
Recurrent Aberrations

FISH Mapped Clone

High Resolution:CCAP
Human BAC Resource

Other NCBI sites

Map Viewer
LocusLink
Entrez Gene
OMIM
PubMed

NCBI Handbook Chapter
Download SKY/M-FISH/CGH data (FTP)

Related sites

Charité

Atlas of Genetic and
Cytogenetics in Oncology and Haematology


Progenetix

Laboratory of Cytomolecular Genetics (CMG)
Helsinki

Jackson Laboratory

CGH Database
Japan

Chromosome Rearrangements in Carcinomas

Cell Line NCI60 Drug Discovery Panel

Useful Mouse Links

Useful Cancer Statistics Links

   

Quick Search Help

The Search Text Box

You can enter a single topic, or any combination of topics in any order. Separate each topic
by a space, without punctuation (i.e., do not use commas or + sign) and then press "GO."

Searchable Topics

  • Submitter, by last name ( Press "Access to public SKY/M-FISH and CGH database" on home
    page to see current list of submitters)
  • Case name
  • Cell line, by name
  • Whole chromosome, chromosome arm, or chromosome breakpoint
  • Diagnosis (morphology), using ICD-0-3* classification terminology or code number
  • Site of disease (topography), using ICD-0-3* classification system terminology or
    code number
  • Specific types of treatment (e.g., drugs)
  • Specific hereditary disorder
  • Mouse strain and genotype
  • Media type and media selection

   *  Use Metaphrase to find ICD-0-3

Example: Type in: Padilla-nash BK-10 Xq27

This will bring up the results of a SKY study of cell line BK-10, done by
Padilla-Nash, who found a chromosomal abnormality involving the Xq27
breakpoint in the BK-10 cell line.

Results of Search

All the cases which conform to all topics are returned. In addition to the information
presented in the table for each case, you can:

  • Press "Case Info" to view clinical and research data and to find a link to the PubMed
    abstract of the reference for the publication in which this case appears.
  • Press "SKY/M-FISH" to obtain a list of all the clones/cells in the case,each of which is linked
    to its own full colored SKY ideogram.
  • Press "CGH" to view the full CGH profile, which displays the losses (in red) and the
    gains (in green) for each chromosome with an abnormal CGH profile.


Questions and Comments:WebMaster


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