Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs.
Nat Methods.
2016 Jun;13(6):521-7. doi: 10.1038/nmeth.3853. Epub 2016 May 2. PubMed PMID:
27135972; PubMed Central PMCID:
PMC4887336.
A Quantitative Approach to Screen for Nephrotoxic Compounds In Vitro.
J Am Soc Nephrol.
2016 Apr;27(4):1015-28. doi: 10.1681/ASN.2015010060. Epub 2015 Aug 10. PubMed PMID:
26260164; PubMed Central PMCID:
PMC4814182.
Fractional killing arises from cell-to-cell variability in overcoming a caspase activity threshold.
Mol Syst Biol.
2015 May 7;11(5):803. doi: 10.15252/msb.20145584. PubMed PMID:
25953765; PubMed Central PMCID:
PMC4461398.
LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.
Nucleic Acids Res.
2014 Jul;42(Web Server issue):W449-60. doi: 10.1093/nar/gku476. Epub 2014 Jun 6. PubMed PMID:
24906883; PubMed Central PMCID:
PMC4086130.
Analysis of growth factor signaling in genetically diverse breast cancer lines.
BMC Biol.
2014 Mar 21;12:20. doi: 10.1186/1741-7007-12-20. PubMed PMID:
24655548; PubMed Central PMCID:
PMC4234128.
Profiles of Basal and stimulated receptor signaling networks predict drug response in breast cancer lines.
Sci Signal.
2013 Sep 24;6(294):ra84. doi: 10.1126/scisignal.2004379. PubMed PMID:
24065145; PubMed Central PMCID:
PMC3845839.
Mapping behavioral specifications to model parameters in synthetic biology.
BMC Bioinformatics.
2013;14 Suppl 10(Suppl 10):S9. doi: 10.1186/1471-2105-14-S10-S9. Epub 2013 Aug 12. PubMed PMID:
24267662; PubMed Central PMCID:
PMC3750501.
Modular design of artificial tissue homeostasis: robust control through synthetic cellular heterogeneity.
PLoS Comput Biol.
2012;8(7):e1002579. doi: 10.1371/journal.pcbi.1002579. Epub 2012 Jul 19. PubMed PMID:
22829755; PubMed Central PMCID:
PMC3400602.
Explaining the length threshold of polyglutamine aggregation.
J Phys Condens Matter.
2012 Jun 20;24(24):244105. doi: 10.1088/0953-8984/24/24/244105. Epub 2012 May 18. PubMed PMID:
22595533.
Effect of network architecture on synchronization and entrainment properties of the circadian oscillations in the suprachiasmatic nucleus.
PLoS Comput Biol.
2012;8(3):e1002419. doi: 10.1371/journal.pcbi.1002419. Epub 2012 Mar 8. PubMed PMID:
22423219; PubMed Central PMCID:
PMC3297560.
Stochastic Simulations in Systems Biology.
In:
Leng J, Sharrock W, editors.
Handbook of Research on Computational Science and Engineering: Theory and Practice
Hershey, PA: IGI Global; 2012.
Deterministic characterization of phase noise in biomolecular oscillators.
Phys Biol.
2011 Oct;8(5):055008. doi: 10.1088/1478-3975/8/5/055008. Epub 2011 Aug 10. PubMed PMID:
21832803.
Efficient characterization of high-dimensional parameter spaces for systems biology.
BMC Syst Biol.
2011 Sep 15;5:142. doi: 10.1186/1752-0509-5-142. PubMed PMID:
21920040; PubMed Central PMCID:
PMC3201035.
Rational design of robust biomolecular circuits: from specification to parameters.
In:
Koeppl H, Densmore D, di Bernardo M, Setti G, editors.
Design and Analysis of Bio-Molecular Circuits
New York: Springer; 2011.
Positive Feedbacks Contribute to the Robustness of the Cell Cycle with Respect to Molecular Noise.
In:
Levine J, Mullhaupt P, editors.
Advances in the Theory of Control, Signals and Systems with Physical Modeling
Heidelberg: Springer-Verlag Berlin Heidelberg; 2011. p.283-295.
'Glocal' robustness analysis and model discrimination for circadian oscillators.
PLoS Comput Biol.
2009 Oct;5(10):e1000534. doi: 10.1371/journal.pcbi.1000534. Epub 2009 Oct 16. PubMed PMID:
19834597; PubMed Central PMCID:
PMC2758577.
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