My Bibliography

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Yu XX, Du X, Moreno CS, Green RE, Ogris E, Feng Q, Chou L, McQuoid MJ, Pallas DC. Methylation of the protein phosphatase 2A catalytic subunit is essential for association of Balpha regulatory subunit but not SG2NA, striatin, or polyomavirus middle tumor antigen. Mol Biol Cell. 2001 Jan;12(1):185-99. doi: 10.1091/mbc.12.1.185. PubMed PMID: 11160832; PubMed Central PMCID: PMC30577.

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Mougous JD, Green RE, Williams SJ, Brenner SE, Bertozzi CR. Sulfotransferases and sulfatases in mycobacteria. Chem Biol. 2002 Jul;9(7):767-76. doi: 10.1016/s1074-5521(02)00175-8. Review. PubMed PMID: 12144918.

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Green RE, Lewis BP, Hillman RT, Blanchette M, Lareau LF, Garnett AT, Rio DC, Brenner SE. Widespread predicted nonsense-mediated mRNA decay of alternatively-spliced transcripts of human normal and disease genes. Bioinformatics. 2003;19 Suppl 1:i118-21. doi: 10.1093/bioinformatics/btg1015. PubMed PMID: 12855447.

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Lewis BP, Green RE, Brenner SE. Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):189-92. doi: 10.1073/pnas.0136770100. Epub 2002 Dec 26. PubMed PMID: 12502788; PubMed Central PMCID: PMC140922.

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Hillman RT, Green RE, Brenner SE. An unappreciated role for RNA surveillance. Genome Biol. 2004;5(2):R8. doi: 10.1186/gb-2004-5-2-r8. Epub 2004 Feb 2. PubMed PMID: 14759258; PubMed Central PMCID: PMC395752.

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Lareau LF, Green RE, Bhatnagar RS, Brenner SE. The evolving roles of alternative splicing. Curr Opin Struct Biol. 2004 Jun;14(3):273-82. doi: 10.1016/j.sbi.2004.05.002. Review. PubMed PMID: 15193306.

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Blanchette M, Labourier E, Green RE, Brenner SE, Rio DC. Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs. Mol Cell. 2004 Jun 18;14(6):775-86. doi: 10.1016/j.molcel.2004.06.012. PubMed PMID: 15200955.

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Blanchette M, Green RE, Brenner SE, Rio DC. Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila. Genes Dev. 2005 Jun 1;19(11):1306-14. doi: 10.1101/gad.1314205. PubMed PMID: 15937219; PubMed Central PMCID: PMC1142554.

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Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schönbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J, Hayashizaki Y. The transcriptional landscape of the mammalian genome. Science. 2005 Sep 2;309(5740):1559-63. doi: 10.1126/science.1112014. PubMed PMID: 16141072.

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Crooks GE, Green RE, Brenner SE. Pairwise alignment incorporating dipeptide covariation. Bioinformatics. 2005 Oct 1;21(19):3704-10. doi: 10.1093/bioinformatics/bti616. Epub 2005 Aug 25. PubMed PMID: 16123116.

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Price GA, Crooks GE, Green RE, Brenner SE. Statistical evaluation of pairwise protein sequence comparison with the Bayesian bootstrap. Bioinformatics. 2005 Oct 15;21(20):3824-31. doi: 10.1093/bioinformatics/bti627. Epub 2005 Aug 16. PubMed PMID: 16105900.

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Swan GE, Cuthbert R, Quevedo M, Green RE, Pain DJ, Bartels P, Cunningham AA, Duncan N, Meharg AA, Oaks JL, Parry-Jones J, Shultz S, Taggart MA, Verdoorn G, Wolter K. Toxicity of diclofenac to Gyps vultures. Biol Lett. 2006 Jun 22;2(2):279-82. doi: 10.1098/rsbl.2005.0425. PubMed PMID: 17148382; PubMed Central PMCID: PMC1618889.

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Stiller M, Green RE, Ronan M, Simons JF, Du L, He W, Egholm M, Rothberg JM, Keates SG, Ovodov ND, Antipina EE, Baryshnikov GF, Kuzmin YV, Vasilevski AA, Wuenschell GE, Termini J, Hofreiter M, Jaenicke-Després V, Pääbo S. Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc Natl Acad Sci U S A. 2006 Sep 12;103(37):13578-84. doi: 10.1073/pnas.0605327103. Epub 2006 Aug 25. PubMed PMID: 16938852; PubMed Central PMCID: PMC1564221.

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Khaitovich P, Kelso J, Franz H, Visagie J, Giger T, Joerchel S, Petzold E, Green RE, Lachmann M, Pääbo S. Functionality of intergenic transcription: an evolutionary comparison. PLoS Genet. 2006 Oct 13;2(10):e171. doi: 10.1371/journal.pgen.0020171. Epub 2006 Aug 28. PubMed PMID: 17040132; PubMed Central PMCID: PMC1599769.

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Green RE, Krause J, Ptak SE, Briggs AW, Ronan MT, Simons JF, Du L, Egholm M, Rothberg JM, Paunovic M, Pääbo S. Analysis of one million base pairs of Neanderthal DNA. Nature. 2006 Nov 16;444(7117):330-6. doi: 10.1038/nature05336. PubMed PMID: 17108958.

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Lareau LF, Inada M, Green RE, Wengrod JC, Brenner SE. Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature. 2007 Apr 19;446(7138):926-9. doi: 10.1038/nature05676. Epub 2007 Mar 14. PubMed PMID: 17361132.

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Chen H, Green RE, Pääbo S, Slatkin M. The joint allele-frequency spectrum in closely related species. Genetics. 2007 Sep;177(1):387-98. doi: 10.1534/genetics.107.070730. Epub 2007 Jul 1. PubMed PMID: 17603120; PubMed Central PMCID: PMC2013700.

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Briggs AW, Stenzel U, Johnson PL, Green RE, Kelso J, Prüfer K, Meyer M, Krause J, Ronan MT, Lachmann M, Pääbo S. Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14616-21. doi: 10.1073/pnas.0704665104. Epub 2007 Aug 21. PubMed PMID: 17715061; PubMed Central PMCID: PMC1976210.

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Krause J, Lalueza-Fox C, Orlando L, Enard W, Green RE, Burbano HA, Hublin JJ, Hänni C, Fortea J, de la Rasilla M, Bertranpetit J, Rosas A, Pääbo S. The derived FOXP2 variant of modern humans was shared with Neandertals. Curr Biol. 2007 Nov 6;17(21):1908-12. doi: 10.1016/j.cub.2007.10.008. Epub 2007 Oct 18. PubMed PMID: 17949978.

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Myles S, Tang K, Somel M, Green RE, Kelso J, Stoneking M. Identification and analysis of genomic regions with large between-population differentiation in humans. Ann Hum Genet. 2008 Jan;72(Pt 1):99-110. doi: 10.1111/j.1469-1809.2007.00390.x. PubMed PMID: 18184145.

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Prüfer K, Stenzel U, Dannemann M, Green RE, Lachmann M, Kelso J. PatMaN: rapid alignment of short sequences to large databases. Bioinformatics. 2008 Jul 1;24(13):1530-1. doi: 10.1093/bioinformatics/btn223. Epub 2008 May 8. PubMed PMID: 18467344; PubMed Central PMCID: PMC2718670.

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Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano HA, Ronan M, Rothberg JM, Egholm M, Rudan P, Brajković D, Kućan Z, Gusić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell. 2008 Aug 8;134(3):416-26. doi: 10.1016/j.cell.2008.06.021. PubMed PMID: 18692465; PubMed Central PMCID: PMC2602844.

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Blanchette M, Green RE, MacArthur S, Brooks AN, Brenner SE, Eisen MB, Rio DC. Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. Mol Cell. 2009 Feb 27;33(4):438-49. doi: 10.1016/j.molcel.2009.01.022. PubMed PMID: 19250905; PubMed Central PMCID: PMC2674966.

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Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE. Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. PLoS Genet. 2009 Jun;5(6):e1000525. doi: 10.1371/journal.pgen.1000525. Epub 2009 Jun 19. PubMed PMID: 19543372; PubMed Central PMCID: PMC2689934.

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Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Lalueza-Fox C, Rudan P, Brajkovic D, Kucan Z, Gusic I, Schmitz R, Doronichev VB, Golovanova LV, de la Rasilla M, Fortea J, Rosas A, Pääbo S. Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science. 2009 Jul 17;325(5938):318-21. doi: 10.1126/science.1174462. PubMed PMID: 19608918.

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Green RE, Briggs AW, Krause J, Prüfer K, Burbano HA, Siebauer M, Lachmann M, Pääbo S. The Neandertal genome and ancient DNA authenticity. EMBO J. 2009 Sep 2;28(17):2494-502. doi: 10.1038/emboj.2009.222. Epub 2009 Aug 6. Review. PubMed PMID: 19661919; PubMed Central PMCID: PMC2725275.

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Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Pääbo S. Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources. J Vis Exp. 2009 Sep 3;(31):1573. doi: 10.3791/1573. PubMed PMID: 19730410; PubMed Central PMCID: PMC3150061.

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Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species. J Hered. 2009 Nov-Dec;100(6):659-74. doi: 10.1093/jhered/esp086. Epub 2009 Nov 5. PubMed PMID: 19892720; PubMed Central PMCID: PMC2877544.

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Prüfer K, Stenzel U, Hofreiter M, Pääbo S, Kelso J, Green RE. Computational challenges in the analysis of ancient DNA. Genome Biol. 2010;11(5):R47. doi: 10.1186/gb-2010-11-5-r47. Epub 2010 May 6. PubMed PMID: 20441577; PubMed Central PMCID: PMC2898072.

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Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Albert FW, de la Rasilla M, Fortea J, Rosas A, Lachmann M, Hannon GJ, Pääbo S. Targeted investigation of the Neandertal genome by array-based sequence capture. Science. 2010 May 7;328(5979):723-5. doi: 10.1126/science.1188046. PubMed PMID: 20448179; PubMed Central PMCID: PMC3140021.

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Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, Alkan C, Prüfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Pääbo S. A draft sequence of the Neandertal genome. Science. 2010 May 7;328(5979):710-722. doi: 10.1126/science.1188021. PubMed PMID: 20448178; PubMed Central PMCID: PMC5100745.

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Rohland N, Reich D, Mallick S, Meyer M, Green RE, Georgiadis NJ, Roca AL, Hofreiter M. Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants. PLoS Biol. 2010 Dec 21;8(12):e1000564. doi: 10.1371/journal.pbio.1000564. PubMed PMID: 21203580; PubMed Central PMCID: PMC3006346.

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Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu Q, Mallick S, Li H, Meyer M, Eichler EE, Stoneking M, Richards M, Talamo S, Shunkov MV, Derevianko AP, Hublin JJ, Kelso J, Slatkin M, Pääbo S. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature. 2010 Dec 23;468(7327):1053-60. doi: 10.1038/nature09710. PubMed PMID: 21179161; PubMed Central PMCID: PMC4306417.

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Taliaferro JM, Alvarez N, Green RE, Blanchette M, Rio DC. Evolution of a tissue-specific splicing network. Genes Dev. 2011 Mar 15;25(6):608-20. doi: 10.1101/gad.2009011. PubMed PMID: 21406555; PubMed Central PMCID: PMC3059834.

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Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE. The developmental transcriptome of Drosophila melanogaster. Nature. 2011 Mar 24;471(7339):473-9. doi: 10.1038/nature09715. Epub 2010 Dec 22. PubMed PMID: 21179090; PubMed Central PMCID: PMC3075879.

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Albert FW, Hodges E, Jensen JD, Besnier F, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Good JM, Green RE, Burbano HA, Plyusnina IZ, Trut L, Andersson L, Schöneberg T, Carlborg O, Hannon GJ, Pääbo S. Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Heredity (Edinb). 2011 Sep;107(3):205-14. doi: 10.1038/hdy.2011.4. Epub 2011 Feb 9. PubMed PMID: 21304545; PubMed Central PMCID: PMC3183948.

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Abi-Rached L, Jobin MJ, Kulkarni S, McWhinnie A, Dalva K, Gragert L, Babrzadeh F, Gharizadeh B, Luo M, Plummer FA, Kimani J, Carrington M, Middleton D, Rajalingam R, Beksac M, Marsh SG, Maiers M, Guethlein LA, Tavoularis S, Little AM, Green RE, Norman PJ, Parham P. The shaping of modern human immune systems by multiregional admixture with archaic humans. Science. 2011 Oct 7;334(6052):89-94. doi: 10.1126/science.1209202. Epub 2011 Aug 25. PubMed PMID: 21868630; PubMed Central PMCID: PMC3677943.

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Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, Simpson JT, Fonseca NA, Birol İ, Docking TR, Ho IY, Rokhsar DS, Chikhi R, Lavenier D, Chapuis G, Naquin D, Maillet N, Schatz MC, Kelley DR, Phillippy AM, Koren S, Yang SP, Wu W, Chou WC, Srivastava A, Shaw TI, Ruby JG, Skewes-Cox P, Betegon M, Dimon MT, Solovyev V, Seledtsov I, Kosarev P, Vorobyev D, Ramirez-Gonzalez R, Leggett R, MacLean D, Xia F, Luo R, Li Z, Xie Y, Liu B, Gnerre S, MacCallum I, Przybylski D, Ribeiro FJ, Yin S, Sharpe T, Hall G, Kersey PJ, Durbin R, Jackman SD, Chapman JA, Huang X, DeRisi JL, Caccamo M, Li Y, Jaffe DB, Green RE, Haussler D, Korf I, Paten B. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Res. 2011 Dec;21(12):2224-41. doi: 10.1101/gr.126599.111. Epub 2011 Sep 16. PubMed PMID: 21926179; PubMed Central PMCID: PMC3227110.

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St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415. PubMed PMID: 22293439; PubMed Central PMCID: PMC3334581.

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Burbano HA, Green RE, Maricic T, Lalueza-Fox C, de la Rasilla M, Rosas A, Kelso J, Pollard KS, Lachmann M, Pääbo S. Analysis of human accelerated DNA regions using archaic hominin genomes. PLoS One. 2012;7(3):e32877. doi: 10.1371/journal.pone.0032877. Epub 2012 Mar 7. PubMed PMID: 22412940; PubMed Central PMCID: PMC3296746.

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Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, Tandon A, Siebauer M, Green RE, Bryc K, Briggs AW, Stenzel U, Dabney J, Shendure J, Kitzman J, Hammer MF, Shunkov MV, Derevianko AP, Patterson N, Andrés AM, Eichler EE, Slatkin M, Reich D, Kelso J, Pääbo S. A high-coverage genome sequence from an archaic Denisovan individual. Science. 2012 Oct 12;338(6104):222-6. doi: 10.1126/science.1224344. Epub 2012 Aug 30. PubMed PMID: 22936568; PubMed Central PMCID: PMC3617501.

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Green RE, Pain DJ. Potential health risks to adults and children in the UK from exposure to dietary lead in gamebirds shot with lead ammunition. Food Chem Toxicol. 2012 Nov;50(11):4180-90. doi: 10.1016/j.fct.2012.08.032. Epub 2012 Aug 24. PubMed PMID: 22939931.

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Prakash V, Bishwakarma MC, Chaudhary A, Cuthbert R, Dave R, Kulkarni M, Kumar S, Paudel K, Ranade S, Shringarpure R, Green RE. The population decline of Gyps vultures in India and Nepal has slowed since veterinary use of diclofenac was banned. PLoS One. 2012;7(11):e49118. doi: 10.1371/journal.pone.0049118. Epub 2012 Nov 7. PubMed PMID: 23145090; PubMed Central PMCID: PMC3492300.

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Hulme MF, Vickery JA, Green RE, Phalan B, Chamberlain DE, Pomeroy DE, Nalwanga D, Mushabe D, Katebaka R, Bolwig S, Atkinson PW. Conserving the birds of Uganda's banana-coffee arc: land sparing and land sharing compared. PLoS One. 2013;8(2):e54597. doi: 10.1371/journal.pone.0054597. Epub 2013 Feb 4. PubMed PMID: 23390501; PubMed Central PMCID: PMC3563584.

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Vohr SH, Green RE. A mouse following in the footsteps of human prehistory. Cell. 2013 Feb 14;152(4):667-8. doi: 10.1016/j.cell.2013.01.039. PubMed PMID: 23415216.

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Cahill JA, Green RE, Fulton TL, Stiller M, Jay F, Ovsyanikov N, Salamzade R, St John J, Stirling I, Slatkin M, Shapiro B. Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution. PLoS Genet. 2013;9(3):e1003345. doi: 10.1371/journal.pgen.1003345. Epub 2013 Mar 14. PubMed PMID: 23516372; PubMed Central PMCID: PMC3597504.

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Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28. PubMed PMID: 23537068; PubMed Central PMCID: PMC4054807.

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Good JM, Wiebe V, Albert FW, Burbano HA, Kircher M, Green RE, Halbwax M, André C, Atencia R, Fischer A, Pääbo S. Comparative population genomics of the ejaculate in humans and the great apes. Mol Biol Evol. 2013 Apr;30(4):964-76. doi: 10.1093/molbev/mst005. Epub 2013 Jan 16. PubMed PMID: 23329688.

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Green RE, Shapiro B. Human evolution: turning back the clock. Curr Biol. 2013 Apr 8;23(7):R286-8. doi: 10.1016/j.cub.2013.02.050. PubMed PMID: 23578879.

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Jeanes C, Vaughan-Higgins R, Green RE, Sainsbury AW, Marshall RN, Blake DP. Two new Eimeria species parasitic in corncrakes (Crex crex) (Gruiformes: Rallidae) in the United Kingdom. J Parasitol. 2013 Aug;99(4):634-8. doi: 10.1645/12-52.1. Epub 2013 Jan 24. PubMed PMID: 23347228.