My Bibliography

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Marée AF, Jilkine A, Dawes A, Grieneisen VA, Edelstein-Keshet L. Polarization and movement of keratocytes: a multiscale modelling approach. Bull Math Biol. 2006 Jul;68(5):1169-211. doi: 10.1007/s11538-006-9131-7. Epub 2006 Jun 23. PubMed PMID: 16794915.

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Dawes AT, Bard Ermentrout G, Cytrynbaum EN, Edelstein-Keshet L. Actin filament branching and protrusion velocity in a simple 1D model of a motile cell. J Theor Biol. 2006 Sep 21;242(2):265-79. doi: 10.1016/j.jtbi.2006.02.017. Epub 2006 Apr 4. PubMed PMID: 16600307.

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Dawes AT, Edelstein-Keshet L. Phosphoinositides and Rho proteins spatially regulate actin polymerization to initiate and maintain directed movement in a one-dimensional model of a motile cell. Biophys J. 2007 Feb 1;92(3):744-68. doi: 10.1529/biophysj.106.090514. Epub 2006 Nov 10. PubMed PMID: 17098793; PubMed Central PMCID: PMC1779977.

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Dawes AT. A mathematical model of alpha-catenin dimerization at adherens junctions in polarized epithelial cells. J Theor Biol. 2009 Apr 7;257(3):480-8. doi: 10.1016/j.jtbi.2008.11.028. Epub 2008 Dec 13. PubMed PMID: 19135061; PubMed Central PMCID: PMC2689185.

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Dawes AT, Munro EM. PAR-3 oligomerization may provide an actin-independent mechanism to maintain distinct par protein domains in the early Caenorhabditis elegans embryo. Biophys J. 2011 Sep 21;101(6):1412-22. doi: 10.1016/j.bpj.2011.07.030. Epub 2011 Sep 20. PubMed PMID: 21943422; PubMed Central PMCID: PMC3177071.

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Dawes AT, Iron D. Cortical geometry may influence placement of interface between Par protein domains in early Caenorhabditis elegans embryos. J Theor Biol. 2013 Sep 21;333:27-37. doi: 10.1016/j.jtbi.2013.04.024. Epub 2013 May 9. PubMed PMID: 23665289.

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White D, de Vries G, Dawes A. Microtubule patterning in the presence of stationary motor distributions. Bull Math Biol. 2014 Aug;76(8):1917-40. doi: 10.1007/s11538-014-9991-1. Epub 2014 Jul 18. PubMed PMID: 25033782.

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Kravtsova N, Dawes AT. Actomyosin regulation and symmetry breaking in a model of polarization in the early Caenorhabditis elegans embryo : symmetry breaking in cell polarization. Bull Math Biol. 2014 Oct;76(10):2426-48. doi: 10.1007/s11538-014-0016-x. Epub 2014 Sep 4. PubMed PMID: 25185748.

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Sturrock M, Dawes AT. Protein abundance may regulate sensitivity to external cues in polarized cells. J R Soc Interface. 2015 May 6;12(106). doi: 10.1098/rsif.2015.0150. PubMed PMID: 25878132; PubMed Central PMCID: PMC4424693.

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White D, de Vries G, Martin J, Dawes A. Microtubule patterning in the presence of moving motor proteins. J Theor Biol. 2015 Oct 7;382:81-90. doi: 10.1016/j.jtbi.2015.06.040. Epub 2015 Jul 6. PubMed PMID: 26159812.

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Coffman VC, McDermott MB, Shtylla B, Dawes AT. Stronger net posterior cortical forces and asymmetric microtubule arrays produce simultaneous centration and rotation of the pronuclear complex in the early Caenorhabditis elegans embryo. Mol Biol Cell. 2016 Nov 7;27(22):3550-3562. doi: 10.1091/mbc.E16-06-0430. Epub 2016 Oct 12. PubMed PMID: 27733624; PubMed Central PMCID: PMC5221587.

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Coffman VC, Kachur TM, Pilgrim DB, Dawes AT. Antagonistic Behaviors of NMY-1 and NMY-2 Maintain Ring Channels in the C. elegans Gonad. Biophys J. 2016 Nov 15;111(10):2202-2213. doi: 10.1016/j.bpj.2016.10.011. PubMed PMID: 27851943; PubMed Central PMCID: PMC5113261.

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Dawes AT, Wu D, Mahalak KK, Zitnik EM, Kravtsova N, Su H, Chamberlin HM. A computational model predicts genetic nodes that allow switching between species-specific responses in a conserved signaling network. Integr Biol (Camb). 2017 Feb 20;9(2):156-166. doi: 10.1039/c6ib00238b. PubMed PMID: 28098310.

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Mahalak KK, Jama AM, Billups SJ, Dawes AT, Chamberlin HM. Differing roles for sur-2/MED23 in C. elegans and C. briggsae vulval development. Dev Genes Evol. 2017 Jun;227(3):213-218. doi: 10.1007/s00427-017-0577-4. Epub 2017 Feb 20. PubMed PMID: 28220250.

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Small LE, Dawes AT. PAR proteins regulate maintenance-phase myosin dynamics during Caenorhabditis elegans zygote polarization. Mol Biol Cell. 2017 Aug 1;28(16):2220-2231. doi: 10.1091/mbc.E16-04-0263. Epub 2017 Jun 14. PubMed PMID: 28615321; PubMed Central PMCID: PMC5531737.

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Hillen T, White D, de Vries G, Dawes A. Existence and uniqueness for a coupled PDE model for motor-induced microtubule organization. J Biol Dyn. 2017 Aug;11(sup2):294-315. doi: 10.1080/17513758.2017.1310939. Epub 2017 Apr 20. PubMed PMID: 28426333.

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Aras BS, Zhou YC, Dawes A, Chou CS. The importance of mechanical constraints for proper polarization and psuedo-cleavage furrow generation in the early Caenorhabditis elegans embryo. PLoS Comput Biol. 2018 Jul;14(7):e1006294. doi: 10.1371/journal.pcbi.1006294. eCollection 2018 Jul. PubMed PMID: 29985915; PubMed Central PMCID: PMC6053242.

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Suggs BZ, Latham AL, Dawes AT, Chamberlin HM. FACT complex gene duplicates exhibit redundant and non-redundant functions in C. elegans. Dev Biol. 2018 Dec 15;444(2):71-82. doi: 10.1016/j.ydbio.2018.10.002. Epub 2018 Oct 15. PubMed PMID: 30336114; PubMed Central PMCID: PMC6310015.

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Cortes DB, Dawes A, Liu J, Nickaeen M, Strychalski W, Maddox AS. Unite to divide - how models and biological experimentation have come together to reveal mechanisms of cytokinesis. J Cell Sci. 2018 Dec 18;131(24). doi: 10.1242/jcs.203570. Review. PubMed PMID: 30563924; PubMed Central PMCID: PMC6307877.

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Ignacio DP, Coffman VC, Dawes AT. Centriole Biogenesis: Symmetry Breaking and Site Selection. Trends Cell Biol. 2019 Jan;29(1):3-5. doi: 10.1016/j.tcb.2018.11.001. Epub 2018 Nov 21. Review. PubMed PMID: 30470626.

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Plourde SM, Amom P, Tan M, Dawes AT, Dobritsa AA. Changes in morphogen kinetics and pollen grain size are potential mechanisms of aberrant pollen aperture patterning in previously observed and novel mutants of Arabidopsis thaliana. PLoS Comput Biol. 2019 Feb;15(2):e1006800. doi: 10.1371/journal.pcbi.1006800. eCollection 2019 Feb. PubMed PMID: 30817762; PubMed Central PMCID: PMC6394904.

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Chamberlin HM, Jain IM, Corchado-Sonera M, Kelley LH, Sharanya D, Jama A, Pabla R, Dawes AT, Gupta BP. Evolution of Transcriptional Repressors Impacts Caenorhabditis Vulval Development. Mol Biol Evol. 2020 May 1;37(5):1350-1361. doi: 10.1093/molbev/msaa009. PubMed PMID: 31960924; PubMed Central PMCID: PMC7182219.

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Seirin-Lee S, Gaffney EA, Dawes AT. CDC-42 Interactions with Par Proteins Are Critical for Proper Patterning in Polarization. Cells. 2020 Sep 5;9(9). doi: 10.3390/cells9092036. PubMed PMID: 32899550; PubMed Central PMCID: PMC7565983.

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Copos C, Bannish B, Gasior K, Pinals R, Rostami M, Dawes AT. Connecting actin polymer dynamics across multiple scales. Using Mathematics to Understand Biological Complexity. 2021; 22. doi: https://doi.org/10.1007/978-3-030-57129-0.

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Ciocanel MV, Juenemann R, Dawes AT, McKinley SA. Topological Data Analysis Approaches to Uncovering the Timing of Ring Structure Onset in Filamentous Networks. Bull Math Biol. 2021 Jan 16;83(3):21. doi: 10.1007/s11538-020-00847-3. PubMed PMID: 33452960; PubMed Central PMCID: PMC7811524.

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Williamson C, Chamberlin HM, Dawes AT. Coordination of local and long range signaling modulates developmental patterning. J Theor Biol. 2021 May 21;517:110596. doi: 10.1016/j.jtbi.2021.110596. Epub 2021 Jan 26. PubMed PMID: 33508328.

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Gandhi P, Ciocanel MV, Niklas K, Dawes AT. Identification of approximate symmetries in biological development. Philos Trans A Math Phys Eng Sci. 2021 Dec 27;379(2213):20200273. doi: 10.1098/rsta.2020.0273. Epub 2021 Nov 8. PubMed PMID: 34743597; PubMed Central PMCID: PMC8580469.

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Ciocanel MV, Chandrasekaran A, Mager C, Ni Q, Papoian GA, Dawes A. Simulated actin reorganization mediated by motor proteins. PLoS Comput Biol. 2022 Apr;18(4):e1010026. doi: 10.1371/journal.pcbi.1010026. eCollection 2022 Apr. PubMed PMID: 35389987; PubMed Central PMCID: PMC9017880.

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Kravtsova N, Chamberlin H, Dawes A. A novel parameter sampling method efficiently uncovers unique properties for sets of mathematical models. [preprint]. 2022 October. doi: 10.21203/rs.3.rs-2074005/v1.

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Ignacio DP, Kravtsova N, Henry J, Palomares RH, Dawes AT. Dynein localization and pronuclear movement in the C. elegans zygote. Cytoskeleton (Hoboken). 2022 Dec;79(12):133-143. doi: 10.1002/cm.21733. Epub 2022 Oct 28. PubMed PMID: 36214774; PubMed Central PMCID: PMC10092226.

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Kravtsova N, McGee Ii RL, Dawes AT. Scalable Gromov-Wasserstein Based Comparison of Biological Time Series. Bull Math Biol. 2023 Jul 7;85(8):77. doi: 10.1007/s11538-023-01175-y. PubMed PMID: 37415049; PubMed Central PMCID: PMC10326159.

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Kravtsova N, Chamberlin HM, Dawes AT. Efficient parameter generation for constrained models using MCMC. Sci Rep. 2023 Sep 28;13(1):16285. doi: 10.1038/s41598-023-43433-y. PubMed PMID: 37770498; PubMed Central PMCID: PMC10539337.

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Rostami MW, Bannish BE, Gasior K, Pinals RL, Copos C, Dawes AT. Inferring local molecular dynamics from the global actin network structure: A case study of 2D synthetic branching actin networks. J Theor Biol. 2023 Nov 7;575:111613. doi: 10.1016/j.jtbi.2023.111613. Epub 2023 Sep 27. PubMed PMID: 37774939; PubMed Central PMCID: PMC10842209.