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emid1 EMI domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 797252, updated on 27-Mar-2024

Summary

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Official Symbol
emid1provided by ZNC
Official Full Name
EMI domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-40
See related
Ensembl:ENSDARG00000076119 AllianceGenome:ZFIN:ZDB-GENE-070705-40
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-149d1.5
Summary
Orthologous to human EMID1 (EMI domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (24886470..25012969, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (24383676..24509159, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2 like 1 Neighboring gene EWS RNA-binding protein 1b Neighboring gene rhomboid domain containing 3 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 5 Neighboring gene patatin-like phospholipase domain containing 7b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Characterization of C1q in teleosts: insight into the molecular and functional evolution of C1q family and classical pathway. Hu YL, et al. J Biol Chem, 2010 Sep 10. PMID 20615881, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in extracellular matrix organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in basement membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
EMI domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    24886470..25012969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165226.4 → XP_005165283.1  EMI domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BCM6
    Conserved Domains (2) summary
    pfam01391
    Location:213 → 265
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:57 → 122
    EMI; EMI domain

  2. XM_001337672.8 → XP_001337708.5  EMI domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M1Q1L4
    Related
    ENSDARP00000122495.1, ENSDART00000146872.2
    Conserved Domains (2) summary
    pfam01391
    Location:213 → 265
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:57 → 122
    EMI; EMI domain

  3. XM_005165225.4 → XP_005165282.1  EMI domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BCG7
    Conserved Domains (2) summary
    pfam01391
    Location:213 → 265
    Collagen; Collagen triple helix repeat (20 copies)
    pfam07546
    Location:57 → 122
    EMI; EMI domain
Nucleotide Protein Strain
Heading Accession and Version

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