Putative DNA quadruplex formation within the human c-kit oncogene

J Am Chem Soc. 2005 Aug 3;127(30):10584-9. doi: 10.1021/ja050823u.

Abstract

The DNA sequence, d(AGGGAGGGCGCTGGGAGGAGGG), occurs within the promoter region of the c-kit oncogene. We show here, using a combination of NMR, circular dichroism, and melting temperature measurements, that this sequence forms a four-stranded quadruplex structure under physiological conditions. Variations in the sequences that intervene between the guanine tracts have been examined, and surprisingly, none of these modified sequences forms a quadruplex arrangement under these conditions. This suggests that the occurrence of quadruplex-forming sequences within the human and other genomes is less than was hitherto expected. The c-kit quadruplex may be a new target for therapeutic intervention in cancers where there is elevated expression of the c-kit gene.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Circular Dichroism
  • DNA / chemistry*
  • DNA / genetics*
  • DNA / metabolism
  • G-Quadruplexes
  • Humans
  • Nuclear Magnetic Resonance, Biomolecular
  • Oncogenes / genetics
  • Promoter Regions, Genetic
  • Proto-Oncogene Proteins c-kit / genetics*

Substances

  • DNA
  • Proto-Oncogene Proteins c-kit