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Chapter 10. Estimating nuclear mRNA decay in Saccharomyces cerevisiae.

Schmid M, Rougemaille M, Libri D, Jensen TH.

Methods Enzymol. 2008;449:205-19.PMID: 19215760 [PubMed - indexed for MEDLINE]Related articles

Structure of the archaeal Kae1/Bud32 fusion protein MJ1130: a model for the eukaryotic EKC/KEOPS subcomplex.

Hecker A, Lopreiato R, Graille M, Collinet B, Forterre P, Libri D, van Tilbeurgh H.

EMBO J. 2008 Sep 3;27(17):2340-51.PMID: 19172740 [PubMed - indexed for MEDLINE]Related articlesFree article

THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.

Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RK, Lemoine S, Blugeon C, Boulay J, Jensen TH, Stutz F, Devaux F, Libri D.

Cell. 2008 Oct 17;135(2):308-21.PMID: 18957205 [PubMed - indexed for MEDLINE]Related articles

Exonucleolysis is required for nuclear mRNA quality control in yeast THO mutants.

Assenholt J, Mouaikel J, Andersen KR, Brodersen DE, Libri D, Jensen TH.

RNA. 2008 Nov;14(11):2305-13. Epub 2008 Sep 29.PMID: 18824516 [PubMed - indexed for MEDLINE]Related articlesFree article

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae.

Thiebaut M, Colin J, Neil H, Jacquier A, Séraphin B, Lacroute F, Libri D.

Mol Cell. 2008 Sep 5;31(5):671-82.PMID: 18775327 [PubMed - indexed for MEDLINE]Related articles

Quality control: Cell and the city.

Libri D.

Biochim Biophys Acta. 2008 Sep;1779(9):523. No abstract available. PMID: 18774537 [PubMed - indexed for MEDLINE]Related articles

Structure of the archaeal Kae1/Bud32 fusion protein MJ1130: a model for the eukaryotic EKC/KEOPS subcomplex.

Hecker A, Lopreiato R, Graille M, Collinet B, Forterre P, Libri D, van Tilbeurgh H.

EMBO J. 2008 Aug 7. [Epub ahead of print]PMID: 18685601 [PubMed - as supplied by publisher]Related articlesFree article

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice.

Gudipati RK, Villa T, Boulay J, Libri D.

Nat Struct Mol Biol. 2008 Aug;15(8):786-94. Epub 2008 Jul 27.PMID: 18660821 [PubMed - indexed for MEDLINE]Related articles

Nuclear quality control of RNA polymerase II ribonucleoproteins in yeast: tilting the balance to shape the transcriptome.

Villa T, Rougemaille M, Libri D.

Biochim Biophys Acta. 2008 Sep;1779(9):524-31. Epub 2008 Jul 1. Review.PMID: 18644474 [PubMed - indexed for MEDLINE]Related articles

mRNA journey to the cytoplasm: attire required.

Rougemaille M, Villa T, Gudipati RK, Libri D.

Biol Cell. 2008 Jun;100(6):327-42. Review.PMID: 18479253 [PubMed - indexed for MEDLINE]Related articles

Binding of an aptamer to the N-terminal fragment of VCAM-1.

Chauveau F, Aissouni Y, Hamm J, Boutin H, Libri D, Ducongé F, Tavitian B.

Bioorg Med Chem Lett. 2007 Nov 15;17(22):6119-22. Epub 2007 Sep 15.PMID: 17905582 [PubMed - indexed for MEDLINE]Related articles

Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants.

Rougemaille M, Gudipati RK, Olesen JR, Thomsen R, Seraphin B, Libri D, Jensen TH.

EMBO J. 2007 May 2;26(9):2317-26. Epub 2007 Apr 5.PMID: 17410208 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of different strategies to select aptamers against a transmembrane protein target.

Pestourie C, Cerchia L, Gombert K, Aissouni Y, Boulay J, De Franciscis V, Libri D, Tavitian B, Ducongé F.

Oligonucleotides. 2006 Winter;16(4):323-35.PMID: 17155908 [PubMed - indexed for MEDLINE]Related articles

A link between transcription and mRNP quality in Saccharomyces cerevisiae.

Olesen JR, Libri D, Jensen TH.

RNA Biol. 2005 Apr;2(2):45-8. Epub 2005 Apr 18. Review.PMID: 17132939 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance.

Thiebaut M, Kisseleva-Romanova E, Rougemaille M, Boulay J, Libri D.

Mol Cell. 2006 Sep 15;23(6):853-64.PMID: 16973437 [PubMed - indexed for MEDLINE]Related articles

Yeast homolog of a cancer-testis antigen defines a new transcription complex.

Kisseleva-Romanova E, Lopreiato R, Baudin-Baillieu A, Rousselle JC, Ilan L, Hofmann K, Namane A, Mann C, Libri D.

EMBO J. 2006 Aug 9;25(15):3576-85. Epub 2006 Jul 27.PMID: 16874308 [PubMed - indexed for MEDLINE]Related articlesFree article

An autocrine loop involving ret and glial cell-derived neurotrophic factor mediates retinoic acid-induced neuroblastoma cell differentiation.

Cerchia L, D'Alessio A, Amabile G, Duconge F, Pestourie C, Tavitian B, Libri D, de Franciscis V.

Mol Cancer Res. 2006 Jul;4(7):481-8.PMID: 16849523 [PubMed - indexed for MEDLINE]Related articlesFree article

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.

Wyers F, Rougemaille M, Badis G, Rousselle JC, Dufour ME, Boulay J, Régnault B, Devaux F, Namane A, Séraphin B, Libri D, Jacquier A.

Cell. 2005 Jun 3;121(5):725-37.PMID: 15935759 [PubMed - indexed for MEDLINE]Related articles

Neutralizing aptamers from whole-cell SELEX inhibit the RET receptor tyrosine kinase.

Cerchia L, Ducongé F, Pestourie C, Boulay J, Aissouni Y, Gombert K, Tavitian B, de Franciscis V, Libri D.

PLoS Biol. 2005 Apr;3(4):e123. Epub 2005 Mar 22.PMID: 15769183 [PubMed - indexed for MEDLINE]Related articlesFree article

Modulation of transcription affects mRNP quality.

Jensen TH, Boulay J, Olesen JR, Colin J, Weyler M, Libri D.

Mol Cell. 2004 Oct 22;16(2):235-44.PMID: 15494310 [PubMed - indexed for MEDLINE]Related articles

Localization of nuclear retained mRNAs in Saccharomyces cerevisiae.

Thomsen R, Libri D, Boulay J, Rosbash M, Jensen TH.

RNA. 2003 Sep;9(9):1049-57.PMID: 12923254 [PubMed - indexed for MEDLINE]Related articlesFree article

Early formation of mRNP: license for export or quality control?

Jensen TH, Dower K, Libri D, Rosbash M.

Mol Cell. 2003 May;11(5):1129-38. Review.PMID: 12769839 [PubMed - indexed for MEDLINE]Related articles

The soluble ectodomain of RetC634Y inhibits both the wild-type and the constitutively active Ret.

Cerchia L, Libri D, Carlomagno MS, de Franciscis V.

Biochem J. 2003 Jun 15;372(Pt 3):897-903.PMID: 12630912 [PubMed - indexed for MEDLINE]Related articlesFree article

Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation.

Libri D, Dower K, Boulay J, Thomsen R, Rosbash M, Jensen TH.

Mol Cell Biol. 2002 Dec;22(23):8254-66.PMID: 12417728 [PubMed - indexed for MEDLINE]Related articlesFree article

Nucleic acid aptamers in cancer medicine.

Cerchia L, Hamm J, Libri D, Tavitian B, de Franciscis V.

FEBS Lett. 2002 Sep 25;528(1-3):12-6. Review.PMID: 12297271 [PubMed - indexed for MEDLINE]Related articles

A role for the Psi-U mismatch in the recognition of the 5' splice site of yeast introns by the U1 small nuclear ribonucleoprotein particle.

Libri D, Duconge F, Levy L, Vinauger M.

J Biol Chem. 2002 May 17;277(20):18173-81. Epub 2002 Mar 4.PMID: 11877437 [PubMed - indexed for MEDLINE]Related articlesFree article

The DECD box putative ATPase Sub2p is an early mRNA export factor.

Jensen TH, Boulay J, Rosbash M, Libri D.

Curr Biol. 2001 Oct 30;11(21):1711-5. Erratum in: Curr Biol. 2004 Mar 9;14(5):447. PMID: 11696331 [PubMed - indexed for MEDLINE]Related articles

Multiple roles for the yeast SUB2/yUAP56 gene in splicing.

Libri D, Graziani N, Saguez C, Boulay J.

Genes Dev. 2001 Jan 1;15(1):36-41.PMID: 11156603 [PubMed - indexed for MEDLINE]Related articlesFree article

Splicing enhancement in the yeast rp51b intron.

Libri D, Lescure A, Rosbash M.

RNA. 2000 Mar;6(3):352-68.PMID: 10744020 [PubMed - indexed for MEDLINE]Related articlesFree article

RNA structural patterns and splicing: molecular basis for an RNA-based enhancer.

Libri D, Stutz F, McCarthy T, Rosbash M.

RNA. 1995 Jun;1(4):425-36.PMID: 7493320 [PubMed - indexed for MEDLINE]Related articlesFree article

Splicing of the alternative exons of the chicken, rat, and Xenopus beta tropomyosin transcripts requires class-specific elements.

Balvay L, Pret AM, Libri D, Helfman DM, Fiszman MY.

J Biol Chem. 1994 Aug 5;269(31):19675-8.PMID: 8051042 [PubMed - indexed for MEDLINE]Related articlesFree article

Pre-mRNA secondary structure and the regulation of splicing.

Balvay L, Libri D, Fiszman MY.

Bioessays. 1993 Mar;15(3):165-9. Review.PMID: 8489523 [PubMed - indexed for MEDLINE]Related articles

Intronic sequence with both negative and positive effects on the regulation of alternative transcripts of the chicken beta tropomyosin transcripts.

Balvay L, Libri D, Gallego M, Fiszman MY.

Nucleic Acids Res. 1992 Aug 11;20(15):3987-92.PMID: 1508684 [PubMed - indexed for MEDLINE]Related articlesFree article

In vivo splicing of the beta tropomyosin pre-mRNA: a role for branch point and donor site competition.

Libri D, Balvay L, Fiszman MY.

Mol Cell Biol. 1992 Jul;12(7):3204-15.PMID: 1620126 [PubMed - indexed for MEDLINE]Related articlesFree article

Cis regulating elements which control in vivo alternative splicing of the chicken beta tropomyosin primary transcript.

Fiszman MY, Libri D, Balvay L.

Symp Soc Exp Biol. 1992;46:355-62.PMID: 1341048 [PubMed - indexed for MEDLINE]Related articles

The chicken gene encoding the alpha isoform of tropomyosin of fast-twitch muscle fibers: organization, expression and identification of the major proteins synthesized.

Lemonnier M, Balvay L, Mouly V, Libri D, Fiszman MY.

Gene. 1991 Nov 15;107(2):229-40.PMID: 1748294 [PubMed - indexed for MEDLINE]Related articles

Tissue-specific splicing in vivo of the beta-tropomyosin gene: dependence on an RNA secondary structure.

Libri D, Piseri A, Fiszman MY.

Science. 1991 Jun 28;252(5014):1842-5.PMID: 2063196 [PubMed - indexed for MEDLINE]Related articles

Exon as well as intron sequences are cis-regulating elements for the mutually exclusive alternative splicing of the beta tropomyosin gene.

Libri D, Goux-Pelletan M, Brody E, Fiszman MY.

Mol Cell Biol. 1990 Oct;10(10):5036-46.PMID: 2398885 [PubMed - indexed for MEDLINE]Related articlesFree article

A nonmuscle tropomyosin is encoded by the smooth/skeletal beta-tropomyosin gene and its RNA is transcribed from an internal promoter.

Libri D, Mouly V, Lemonnier M, Fiszman MY.

J Biol Chem. 1990 Feb 25;265(6):3471-3.PMID: 2303454 [PubMed - indexed for MEDLINE]Related articlesFree article

In vitro splicing of mutually exclusive exons from the chicken beta-tropomyosin gene: role of the branch point location and very long pyrimidine stretch.

Goux-Pelletan M, Libri D, d'Aubenton-Carafa Y, Fiszman M, Brody E, Marie J.

EMBO J. 1990 Jan;9(1):241-9.PMID: 2153077 [PubMed - indexed for MEDLINE]Related articlesFree article

A subfragment of the beta tropomyosin gene is alternatively spliced when transfected into differentiating muscle cells.

Libri D, Marie J, Brody E, Fiszman MY.

Nucleic Acids Res. 1989 Aug 25;17(16):6449-62.PMID: 2550893 [PubMed - indexed for MEDLINE]Related articlesFree article

Chick alpha tropomyosin gene contains three sets of mutually exclusive alternatively spliced exons.

Lemonnier M, Libri D, Fiszman MY.

Nucleic Acids Res. 1989 Jul 11;17(13):5400. No abstract available. PMID: 2762137 [PubMed - indexed for MEDLINE]Related articlesFree article

A single gene codes for the beta subunits of smooth and skeletal muscle tropomyosin in the chicken.

Libri D, Lemonnier M, Meinnel T, Fiszman MY.

J Biol Chem. 1989 Feb 15;264(5):2935-44.PMID: 2914939 [PubMed - indexed for MEDLINE]Related articlesFree article

Tissue-specific transcriptional control of alpha- and beta-tropomyosins in chicken muscle development.

Meinnel T, Libri D, Mouly V, Gros D, Fiszman MY, Lemonnier M.

Dev Biol. 1989 Feb;131(2):430-8.PMID: 2912802 [PubMed - indexed for MEDLINE]Related articles

[Regulation of the expression of alpha and beta tropomyosin genes during development of the pectoral muscle in the chicken]

Meinnel T, Libri D, Gros D, Fiszman MY, Lemonnier M.

Reprod Nutr Dev. 1988;28(3B):715-20. French. PMID: 3187182 [PubMed - indexed for MEDLINE]Related articles